Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g01141 ATGCAAAGTATTTCACACCGACCACACCAGGAGTGGCTCAAAATCAACGAGAATTCATCCAATTCTCGTTCATGGATGAGAGCCAACCCCACCCAGAAAATGAACACAGGCAGAAAGGTTCGAAAGAATGATTCGTCAATGGCGTCCTTAACTAGACAAAAGATTTTCAGAGGAGTGAGACAAAGACACTGGGGAAAATGGGTCGCAGAAATAAGATTGCCAAAAAACAGAACGAGGGTCTGGTTAGGGACCTTCAACACAGCTGAAGAAGCCGCCGTTGCTTACGACACAGCTGCTTACATTCTGCGCGGAGAGTTCGCTCATTTGAATTTTCCAGATCAAAAGCATCGACTTCGAACAAATTCCTTGAATCAACCCACCGTTTCTCTTATTCAATCCAAGTTGCAGATGATCTCAGAAGCTGCTTTTGATCATTCAAAACCAAATGAACAGTCAACCTCGTCGTCCAAGAACGAGCCCAGAAAACAAATGGAGACGAAGATAACCCAGGAGATATTAGAAGATGTTCAGCTCAGTAGAATGCCTTCTCTGGACATGGACACAATCTGGGAAGCTATTTCAGTCACAGATTCATAA 597 43.89 MQSISHRPHQEWLKINENSSNSRSWMRANPTQKMNTGRKVRKNDSSMASLTRQKIFRGVRQRHWGKWVAEIRLPKNRTRVWLGTFNTAEEAAVAYDTAAYILRGEFAHLNFPDQKHRLRTNSLNQPTVSLIQSKLQMISEAAFDHSKPNEQSTSSSKNEPRKQMETKITQEILEDVQLSRMPSLDMDTIWEAISVTDS 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23686796 23687392 - Bpe018559.1 Bpe05g01141 104918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g01141 198 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Bpe05g01141 198 MobiDBLite consensus disorder prediction 145 159 - -
Bpe05g01141 198 MobiDBLite consensus disorder prediction 144 166 - -
Bpe05g01141 198 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Bpe05g01141 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 10 197 - -
Bpe05g01141 198 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Bpe05g01141 198 MobiDBLite consensus disorder prediction 1 47 - -
Bpe05g01141 198 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Bpe05g01141 198 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Bpe05g01141 198 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Bpe05g01141 198 CDD AP2 54 114 IPR001471 GO:0003700|GO:0006355
Bpe05g01141 198 Pfam AP2 domain 56 104 IPR001471 GO:0003700|GO:0006355
Bpe05g01141 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 10 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00453 Bpe-Chr4:2901562 Bpe05g01141 Bpe-Chr5:23686796 6.29E-35 dispersed
Bpe05g01141 Bpe-Chr5:23686796 Bpe15g00452 Bpe-Chr15:15948624 3.26E-37 dispersed
Bpe05g01141 Bpe-Chr5:23686796 Bpe02g00098 Bpe-Chr2:735724 1.03E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21522 PF00847 AP2 2.20E-12 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g01141 - - jre:109003446 199.519