Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g01143 ATGGGTAAGGAAAAGGTTCACATCAACATTGTTGTCATTGGTCATGTTGACTCTGGAAAGTCTACCACCACCGGCCACCTTATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTCGAGAAAGAAGCTGCTGAAATGAACAAGAGGTCATTCAAGTATGCATGGGTTCTTGATAAGCTCAAGGCAGAGCGTGAGCGTGGTATTACTATTGATATTGCATTGTGGAAATTTGAGACCACCAAGTACTACTGCACTGTCATTGATGCTCCTGGACATCGAGACTTTATCAAGAACATGATTACTGGAACTTCCCAAGCAGATTGTGCTGTTCTCATTATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGACAGACCCGTGAACATGCCCTCCTTGCTTTCACTCTTGGAGTCAAGCAGATGATTTGCTGCTGTAACAAGATGGATGCCACCACACCCAAGTATTCTAAGGCTAGGTACGATGAAATTGTTAAAGAAGTGTCTTCTTACCTGAAGAAGGTTGGATACAACCCTGACAAAATCCCATTTGTTCCCATATCTGGGTTTGAGGGTGATAACATGATTGAGAGATCTACAAACCTTGATTGGTACAAGGGTCCTACCCTCCTCGATGCCCTTGACTTGATCCAGGAGCCCAAGAGGCCGTCAGACAAGCCTCTTCGACTGCCACTTCAGGATGTGTACAAGATTGGTGGTATTGGTACTGTCCCTGTTGGACGAGTTGAAACTGGTGTGCTGAAGCCTGGTATGGTGGTCACCTTTGGGCCAACTGGACTGACCACTGAAGTTAAGTCTGTTGAAATGCATCACGAGGCTCTACAGGAGGCCCTTCCTGGTGACAACGTTGGCTTTAACGTGAAGAATGTTGCAGTGAAAGATCTGAAGCGTGGTTTTGTTGCATCCAACTCCAAAGAAGATCCAGCCAGGGAGGCTGCAAATTTCACATCGCAAGTGATTATCATGAACCACCCTGGACAAATTGGAAATGGTTATGCCCCAGTTCTTGATTGCCACACCTCTCACATTGCCGTCAAGTTTGCAGAGATATTGACCAAAATTGACAGGCGTTCTGGGAAAGAGCTTGAGAAGGAGCCCAAGTTTTTGAAGAATGGGGACGCTGGAATGGTGAAGATGATTCCCACCAAGCCCATGGTGGTGGAGACATTCTCGGAGTATCCGCCGTTGGGTCGTTTTGCGGTCCGTGACATGCGCCAGACTGTGGCTGTTGGTGTCATCAAGAGCGTGGAGAAGAAAGACCCAAGCGGAGCTAAAGTGACCAAATCCGCCGCCAAGAAGGGAGGCAAATAA 1350 47.04 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKEDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKGGK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23694572 23696568 - Bpe018561.1 Bpe05g01143 104920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g01143 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Bpe05g01143 449 Gene3D Translation factors 323 430 - -
Bpe05g01143 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Bpe05g01143 449 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Bpe05g01143 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Bpe05g01143 449 Gene3D Translation factors 229 316 - -
Bpe05g01143 449 PANTHER TRANSLATION FACTOR 1 447 - -
Bpe05g01143 449 CDD EF1_alpha_II 230 320 - -
Bpe05g01143 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Bpe05g01143 449 Pfam Elongation factor Tu GTP binding domain 6 221 IPR000795 GO:0003924|GO:0005525
Bpe05g01143 449 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 447 - -
Bpe05g01143 449 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Bpe05g01143 449 Gene3D - 1 226 IPR027417 -
Bpe05g01143 449 CDD EF1_alpha_III 323 426 - -
Bpe05g01143 449 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Bpe05g01143 449 CDD EF1_alpha 9 227 - -
Bpe05g01143 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Bpe05g01143 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Bpe05g01143 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Bpe05g01143 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Bpe05g01143 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Bpe05g01143 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Bpe05g01143 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00600 Bpe-Chr2:3899139 Bpe05g01143 Bpe-Chr5:23694572 3.08E-67 dispersed
Bpe04g01679 Bpe-Chr4:22788032 Bpe05g01143 Bpe-Chr5:23694572 0 dispersed
Bpe05g01143 Bpe-Chr5:23694572 Bpe15g01323 Bpe-Chr15:21413315 0 dispersed
Bpe13g00233 Bpe-Chr13:10341571 Bpe05g01143 Bpe-Chr5:23694572 6.38E-46 dispersed
Bpe05g01143 Bpe-Chr5:23694572 Bpe08g00145 Bpe-Chr8:770039 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g01143 K03231 - mesc:110601548 892.878