Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe06g00027 | ATGGAGTGTGTGGAAACTGCTGCGTTGAGGGCCAGCTTGTGGAGGGAGACGAGCTCGAAATCGAGCTCCCAATGTTGTTTTGATGAGCAAGAAATAGGGTCGACGACTGTTCATAATGTTGTGGGTTCGGACGATTTTTCTGTGGACGAGCTGCTTGATTTGTCGAATGATGATGGGTTTATAAAGGAGGAAGAAGATGACATGGGTTTTGCCGCTTTGTCTAGTTCGGTTAAGAAAACCCATCAAATTAGCGAAATTTCTAACCCGAGTGCCAGTTTCGCCGTAAAAGACGAACTGAGCTTTCCGGCAGATGATTTAGCAGACCTCGAATGGCTCTCGAATCTCGTTGAGGATTGTTTCTCGGAATACTCTGAACCTTTTCCGGCGGCTGTCTTGACGGCGAAGCCGCTGAACCAGGCCGAAACCAGGCTAGGACTGGAGACGGTCCCGCGGCCGCCTTTTAAGACGCCGGTTCCGGCAAAGGCCAGAAGCAAGCGCGCTAGAACCGGTGGTCGCGTTTGGTCTCTTGGGTCTCCGCCGCTGGCTGAGTCATCTTCAAGCTCTTCGACATCTTCGTTTTCTCCTCCATCTCCCACAAACCCGCACCTCTTTCACAAGGACGACACAGCTGAACTTTTTAATCCGCTGGAGAAGAAGCCGAAGAAGAACGAAAACGGAGAGGGTAGCCAGGTTCCCCTGCGGTGCAGCCATTGCGGCGTGCAGAAAACCCCACAGTGGAGAACCGGACCGCTCGGGGCGAAAACACTCTGCAACGCATGTGGGGTGCGCTACAAATCCGGTCGACTCTTGCCGGAATATAGACCGGCCTGTAGCCCCACATTTTCGAGCGAAATACACTCAAACCACCACCGGAAAGTACTGGAAATGCGTCGGAAGAAGGAGGTTCTCGTAGTCATAGCAGCAGCAAACTCGGGTTCGACCCCTCCGGCCGTGTCCAGTTTTTGA | 966 | 53.0 | MECVETAALRASLWRETSSKSSSQCCFDEQEIGSTTVHNVVGSDDFSVDELLDLSNDDGFIKEEEDDMGFAALSSSVKKTHQISEISNPSASFAVKDELSFPADDLADLEWLSNLVEDCFSEYSEPFPAAVLTAKPLNQAETRLGLETVPRPPFKTPVPAKARSKRARTGGRVWSLGSPPLAESSSSSSTSSFSPPSPTNPHLFHKDDTAELFNPLEKKPKKNENGEGSQVPLRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSEIHSNHHRKVLEMRRKKEVLVVIAAANSGSTPPAVSSF | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 313581 | 314624 | - | Bpe019470.1 | Bpe06g00027 | 104965 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe06g00027 | 321 | MobiDBLite | consensus disorder prediction | 179 | 199 | - | - | |
Bpe06g00027 | 321 | Pfam | GATA zinc finger | 235 | 269 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe06g00027 | 321 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 302 | - | - | |
Bpe06g00027 | 321 | Gene3D | - | 226 | 302 | IPR013088 | GO:0006355|GO:0008270 | |
Bpe06g00027 | 321 | MobiDBLite | consensus disorder prediction | 145 | 206 | - | - | |
Bpe06g00027 | 321 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 230 | 291 | - | - | |
Bpe06g00027 | 321 | PIRSF | Txn_fac_GATA_plant | 6 | 315 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Bpe06g00027 | 321 | SMART | GATA_3 | 229 | 283 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe06g00027 | 321 | ProSitePatterns | GATA-type zinc finger domain. | 235 | 260 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe06g00027 | 321 | ProSiteProfiles | GATA-type zinc finger domain profile. | 229 | 265 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe06g00027 | 321 | CDD | ZnF_GATA | 234 | 282 | IPR000679 | GO:0006355|GO:0043565 | |
Bpe06g00027 | 321 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 302 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe06g00027 | Bpe13g00427 | CCT | |
Bpe06g00027 | Bpe13g00427 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe06g00027 | Bpe-Chr6:313581 | Bpe07g00497 | Bpe-Chr7:9691597 | 1.07E-62 | dispersed | |
Bpe07g00195 | Bpe-Chr7:1343258 | Bpe06g00027 | Bpe-Chr6:313581 | 4.96E-09 | dispersed | |
Bpe08g01446 | Bpe-Chr8:15207547 | Bpe06g00027 | Bpe-Chr6:313581 | 3.10E-08 | dispersed | |
Bpe13g00427 | Bpe-Chr13:11881662 | Bpe06g00027 | Bpe-Chr6:313581 | 3.23E-94 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21527 | PF00320 | GATA | 4.40E-16 | CL0167 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe06g00027 | - | - | zju:107410110 | 313.923 |