Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00027 ATGGAGTGTGTGGAAACTGCTGCGTTGAGGGCCAGCTTGTGGAGGGAGACGAGCTCGAAATCGAGCTCCCAATGTTGTTTTGATGAGCAAGAAATAGGGTCGACGACTGTTCATAATGTTGTGGGTTCGGACGATTTTTCTGTGGACGAGCTGCTTGATTTGTCGAATGATGATGGGTTTATAAAGGAGGAAGAAGATGACATGGGTTTTGCCGCTTTGTCTAGTTCGGTTAAGAAAACCCATCAAATTAGCGAAATTTCTAACCCGAGTGCCAGTTTCGCCGTAAAAGACGAACTGAGCTTTCCGGCAGATGATTTAGCAGACCTCGAATGGCTCTCGAATCTCGTTGAGGATTGTTTCTCGGAATACTCTGAACCTTTTCCGGCGGCTGTCTTGACGGCGAAGCCGCTGAACCAGGCCGAAACCAGGCTAGGACTGGAGACGGTCCCGCGGCCGCCTTTTAAGACGCCGGTTCCGGCAAAGGCCAGAAGCAAGCGCGCTAGAACCGGTGGTCGCGTTTGGTCTCTTGGGTCTCCGCCGCTGGCTGAGTCATCTTCAAGCTCTTCGACATCTTCGTTTTCTCCTCCATCTCCCACAAACCCGCACCTCTTTCACAAGGACGACACAGCTGAACTTTTTAATCCGCTGGAGAAGAAGCCGAAGAAGAACGAAAACGGAGAGGGTAGCCAGGTTCCCCTGCGGTGCAGCCATTGCGGCGTGCAGAAAACCCCACAGTGGAGAACCGGACCGCTCGGGGCGAAAACACTCTGCAACGCATGTGGGGTGCGCTACAAATCCGGTCGACTCTTGCCGGAATATAGACCGGCCTGTAGCCCCACATTTTCGAGCGAAATACACTCAAACCACCACCGGAAAGTACTGGAAATGCGTCGGAAGAAGGAGGTTCTCGTAGTCATAGCAGCAGCAAACTCGGGTTCGACCCCTCCGGCCGTGTCCAGTTTTTGA 966 53.0 MECVETAALRASLWRETSSKSSSQCCFDEQEIGSTTVHNVVGSDDFSVDELLDLSNDDGFIKEEEDDMGFAALSSSVKKTHQISEISNPSASFAVKDELSFPADDLADLEWLSNLVEDCFSEYSEPFPAAVLTAKPLNQAETRLGLETVPRPPFKTPVPAKARSKRARTGGRVWSLGSPPLAESSSSSSTSSFSPPSPTNPHLFHKDDTAELFNPLEKKPKKNENGEGSQVPLRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSEIHSNHHRKVLEMRRKKEVLVVIAAANSGSTPPAVSSF 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 313581 314624 - Bpe019470.1 Bpe06g00027 104965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00027 321 MobiDBLite consensus disorder prediction 179 199 - -
Bpe06g00027 321 Pfam GATA zinc finger 235 269 IPR000679 GO:0006355|GO:0043565
Bpe06g00027 321 PANTHER GATA TRANSCRIPTION FACTOR 1 302 - -
Bpe06g00027 321 Gene3D - 226 302 IPR013088 GO:0006355|GO:0008270
Bpe06g00027 321 MobiDBLite consensus disorder prediction 145 206 - -
Bpe06g00027 321 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 291 - -
Bpe06g00027 321 PIRSF Txn_fac_GATA_plant 6 315 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bpe06g00027 321 SMART GATA_3 229 283 IPR000679 GO:0006355|GO:0043565
Bpe06g00027 321 ProSitePatterns GATA-type zinc finger domain. 235 260 IPR000679 GO:0006355|GO:0043565
Bpe06g00027 321 ProSiteProfiles GATA-type zinc finger domain profile. 229 265 IPR000679 GO:0006355|GO:0043565
Bpe06g00027 321 CDD ZnF_GATA 234 282 IPR000679 GO:0006355|GO:0043565
Bpe06g00027 321 PANTHER GATA TRANSCRIPTION FACTOR 1 302 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe06g00027 Bpe13g00427 CCT
Bpe06g00027 Bpe13g00427 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00027 Bpe-Chr6:313581 Bpe07g00497 Bpe-Chr7:9691597 1.07E-62 dispersed
Bpe07g00195 Bpe-Chr7:1343258 Bpe06g00027 Bpe-Chr6:313581 4.96E-09 dispersed
Bpe08g01446 Bpe-Chr8:15207547 Bpe06g00027 Bpe-Chr6:313581 3.10E-08 dispersed
Bpe13g00427 Bpe-Chr13:11881662 Bpe06g00027 Bpe-Chr6:313581 3.23E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21527 PF00320 GATA 4.40E-16 CL0167 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00027 - - zju:107410110 313.923