Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00027 ATGGAGTGTGTGGAAACTGCTGCGTTGAGGGCCAGCTTGTGGAGGGAGACGAGCTCGAAATCGAGCTCCCAATGTTGTTTTGATGAGCAAGAAATAGGGTCGACGACTGTTCATAATGTTGTGGGTTCGGACGATTTTTCTGTGGACGAGCTGCTTGATTTGTCGAATGATGATGGGTTTATAAAGGAGGAAGAAGATGACATGGGTTTTGCCGCTTTGTCTAGTTCGGTTAAGAAAACCCATCAAATTAGCGAAATTTCTAACCCGAGTGCCAGTTTCGCCGTAAAAGACGAACTGAGCTTTCCGGCAGATGATTTAGCAGACCTCGAATGGCTCTCGAATCTCGTTGAGGATTGTTTCTCGGAATACTCTGAACCTTTTCCGGCGGCTGTCTTGACGGCGAAGCCGCTGAACCAGGCCGAAACCAGGCTAGGACTGGAGACGGTCCCGCGGCCGCCTTTTAAGACGCCGGTTCCGGCAAAGGCCAGAAGCAAGCGCGCTAGAACCGGTGGTCGCGTTTGGTCTCTTGGGTCTCCGCCGCTGGCTGAGTCATCTTCAAGCTCTTCGACATCTTCGTTTTCTCCTCCATCTCCCACAAACCCGCACCTCTTTCACAAGGACGACACAGCTGAACTTTTTAATCCGCTGGAGAAGAAGCCGAAGAAGAACGAAAACGGAGAGGGTAGCCAGGTTCCCCTGCGGTGCAGCCATTGCGGCGTGCAGAAAACCCCACAGTGGAGAACCGGACCGCTCGGGGCGAAAACACTCTGCAACGCATGTGGGGTGCGCTACAAATCCGGTCGACTCTTGCCGGAATATAGACCGGCCTGTAGCCCCACATTTTCGAGCGAAATACACTCAAACCACCACCGGAAAGTACTGGAAATGCGTCGGAAGAAGGAGGTTCTCGTAGTCATAGCAGCAGCAAACTCGGGTTCGACCCCTCCGGCCGTGTCCAGTTTTTGA 966 53.0 MECVETAALRASLWRETSSKSSSQCCFDEQEIGSTTVHNVVGSDDFSVDELLDLSNDDGFIKEEEDDMGFAALSSSVKKTHQISEISNPSASFAVKDELSFPADDLADLEWLSNLVEDCFSEYSEPFPAAVLTAKPLNQAETRLGLETVPRPPFKTPVPAKARSKRARTGGRVWSLGSPPLAESSSSSSTSSFSPPSPTNPHLFHKDDTAELFNPLEKKPKKNENGEGSQVPLRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSEIHSNHHRKVLEMRRKKEVLVVIAAANSGSTPPAVSSF 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 313581 314624 - Bpe019470.1 Bpe06g00027 104965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00027 321 MobiDBLite consensus disorder prediction 179 199 - -
Bpe06g00027 321 Pfam GATA zinc finger 235 269 IPR000679 GO:0006355|GO:0043565
Bpe06g00027 321 PANTHER GATA TRANSCRIPTION FACTOR 1 302 - -
Bpe06g00027 321 Gene3D - 226 302 IPR013088 GO:0006355|GO:0008270
Bpe06g00027 321 MobiDBLite consensus disorder prediction 145 206 - -
Bpe06g00027 321 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 291 - -
Bpe06g00027 321 PIRSF Txn_fac_GATA_plant 6 315 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bpe06g00027 321 SMART GATA_3 229 283 IPR000679 GO:0006355|GO:0043565
Bpe06g00027 321 ProSitePatterns GATA-type zinc finger domain. 235 260 IPR000679 GO:0006355|GO:0043565
Bpe06g00027 321 ProSiteProfiles GATA-type zinc finger domain profile. 229 265 IPR000679 GO:0006355|GO:0043565
Bpe06g00027 321 CDD ZnF_GATA 234 282 IPR000679 GO:0006355|GO:0043565
Bpe06g00027 321 PANTHER GATA TRANSCRIPTION FACTOR 1 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00027 - - - zju:107410110 313.923
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe06g00027 Bpe13g00427 CCT
Bpe06g00027 Bpe13g00427 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00027 Bpe-Chr6:313581 Bpe07g00497 Bpe-Chr7:9691597 1.07E-62 dispersed
Bpe07g00195 Bpe-Chr7:1343258 Bpe06g00027 Bpe-Chr6:313581 4.96E-09 dispersed
Bpe08g01446 Bpe-Chr8:15207547 Bpe06g00027 Bpe-Chr6:313581 3.10E-08 dispersed
Bpe13g00427 Bpe-Chr13:11881662 Bpe06g00027 Bpe-Chr6:313581 3.23E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1071 Blo04g00899 Blo16g00063 Bda04g00030 . . Bpe13g00427 . . . . Cma03g00704 . Car03g00646 . Sed07g1682 . Cpe10g00648 Bhi03g00894 Tan03g2048 Cmetu04g1399 . Hepe04g1570 . . Cla01g01957 Cam01g2046 Cec04g1704 Cco04g1769 Clacu01g2068 Cmu01g1945 Cre04g1619 . . . . Lsi01g00626 . Chy07g01272 Cme08g00904 . . Bda11g01846 . . Bpe06g00027 Bma03g00976 . . Cmo03g00730 . . Cma20g00811 . . . . Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa06g03299 Chy02g00597 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00427 CCT,ECH 14 325 C2C2-Gata Transcription Factor Family AT5G66320 51.3 1.4e-67 253.4
Bpe06g00027 CCT,ECH 4 297 C2C2-Gata Transcription Factor Family AT5G66320 50.6 2.0e-61 233.0
Bpe06g00027 CCT,ECH 44 297 C2C2-Gata Transcription Factor Family AT3G51080 51.1 6.6e-51 198.0
Bpe08g01446 . 1 514 C2C2-Gata Transcription Factor Family AT4G17570 51.8 3.4e-129 458.8
Bpe07g00195 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 52.7 3.6e-123 438.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21527 PF00320 GATA 4.40E-16 CL0167 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00027 Bpe_Chr06 FPKM 1.503765 2.233833 32.03751 33.283409 1.091655 0.0 1.153678 8.901017 10.133414 12.936245