Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00029 ATGGCGTCGGTTGCTCCAGTTTCTTCATGGATCCCCGAAGATGATATTCTTTTGAAGAACGCTGTCGAGGCAGGAGCTTCATTAGAAGCACTTGCTAAAGGTGCTGTGCATTTCTCTCGGAAATTTACGGTTCGAGAACTTCAAGATCGTTGGCGTTCTCTCTTGTATGACCCAGTTATTTCAGCTGAAGCTTCAGGTCGTATGCTTGAGTTTGAACTATCTGCTCCTAATGATTTGTCCAAGAGCCACCGATTTAATAACTCAAGAGAAATCACGGCAAAAAGAAAGCCAGAAAGCATTCATAGCCTGTATTATAGAATGAGGAAAAGAATGTACAATCAAGCTGTTAATCCTTTCGATCTAAGTTTTCTTGGTTCGCCAAACTATACTGCTTGCATTGGAAATGGAGGTGATAGTGAAAGAGTTGGAATGGATGTTGATAATAATTTAATTGATTATGGGAATTGTATGGGGCCACATCCTCATGGCTTTCCAGATATTCCTGTGTTGAAAAGGAGGGAAGACGTTTCAAAAGCTGGTTGGGAAAGTGATCAGGATGTCCAAGAGATGCAAGGGGGTGTTCAGATTGCAGTGGAAGCAATTGGTTCATCAGACATTTTAGGTTATGATATTTCTGATCATCCTGATTCGCTCTTGAACATTCCAAATGAAGATGAAATTCTGTTTATGGAGTTTGATGGCAAAGGTGTGATGGAAGAGGCTGTTGATTCACTTTTGCTGAACTCGCCGACTGTTTACTCAAAAGATACATCAGACGCTGATGAACATCAAGACTTAGTTTCTAACAAAGATCATCCTCTTTCTGAAGATTTAAGCACTCTGGTCTTAGTAGATATAACAGATTTGCCGCCACATTCTGTTCATGGCAGTCATGAAATGCTTAGTCATGCTGATGATAATAGGCAATCCTTGACATGTGCACCATCATCCCATTCTCCTCTTAATCAAGGAGAAATGAATTGTATATTGAACATCGAGGACCCGGAAATCCCATGCAATGATGATATGTTTCCTTCCAAAACTATCAGACCTAGTTTTGTAGACGACACAGATTTATTTTCTTCGTCTGTTCTTCCAAAATATCATTCACTAGAAATGACTCTGAAAAGAGAAGACAATCCTAAACAGTTGGGCCTCGTTGCTCATATTCTAGAATCAGATATTTTATCTAAATCAAGTCCAAATGATCGACCATTCAATCATGAAGTAAAAAGAGAAAATTGTGATGGTTACTGTCTTTCTGCTGTGGCCAGACATGTTAACAGTTTTCCTTCCAGTCCTAAGACTTGCATGGCAGAGCATGGAACTTCAAAGAGTGCCACTTCGAATGCCCTAAAAGAAGAGGATGGTCAATCTGCAGTTGGGGAACAAGTAATTCTGCTTGTTGACCCAGGATCTGCAAGAGCAACAGTTGGAGAATCAGAAGCAAATACGTCAACACTAGATCTTGAGGAACTTGACACGGATGATAATTTTCCTTCCTTTTCTGACATTGAAGCTATGATACTTGAAATGGATTTATGGCCAAATGATCATGAGTTATACGTCAACAAAGAAGTCTTAAGATATAAGCATGAGGATACTAAGAGGAAAATCATGAGGCTCGAACAATGTGCTAGATCAGCCACACAAAGAACCATAGCATCGAAGGGTGCATTTGCCATCCTGTATGGCCGTCATCTGAAGCATTATATCAAGAAAGCAGAGGTCATGCTTGGTAGATCGACAAATGACTCTAAAGTTGACATTGACTTGAGAAGAGAAGGGCGTGCCAACCAAATATCAAGGCGCCAGGCTGTCATACGGATGCAAAAAGATGGTTCTTTTGTTCTAAAAAACCTTGGCAAGAATCCCGTCTTTATAAATGGAAAGGAAGTTTGTACTGGACAGCTCCTTGGTCTTAGTTCCAATAGCTTGATCGAGCTTCGGGAAATAGCTCTTGTTTTTGAAACCAATCCGAATTCCGTGAGGCAGTATCTTACGAAATTAACAAGGAACAAACTAAGCAATTAA 2034 40.22 MASVAPVSSWIPEDDILLKNAVEAGASLEALAKGAVHFSRKFTVRELQDRWRSLLYDPVISAEASGRMLEFELSAPNDLSKSHRFNNSREITAKRKPESIHSLYYRMRKRMYNQAVNPFDLSFLGSPNYTACIGNGGDSERVGMDVDNNLIDYGNCMGPHPHGFPDIPVLKRREDVSKAGWESDQDVQEMQGGVQIAVEAIGSSDILGYDISDHPDSLLNIPNEDEILFMEFDGKGVMEEAVDSLLLNSPTVYSKDTSDADEHQDLVSNKDHPLSEDLSTLVLVDITDLPPHSVHGSHEMLSHADDNRQSLTCAPSSHSPLNQGEMNCILNIEDPEIPCNDDMFPSKTIRPSFVDDTDLFSSSVLPKYHSLEMTLKREDNPKQLGLVAHILESDILSKSSPNDRPFNHEVKRENCDGYCLSAVARHVNSFPSSPKTCMAEHGTSKSATSNALKEEDGQSAVGEQVILLVDPGSARATVGESEANTSTLDLEELDTDDNFPSFSDIEAMILEMDLWPNDHELYVNKEVLRYKHEDTKRKIMRLEQCARSATQRTIASKGAFAILYGRHLKHYIKKAEVMLGRSTNDSKVDIDLRREGRANQISRRQAVIRMQKDGSFVLKNLGKNPVFINGKEVCTGQLLGLSSNSLIELREIALVFETNPNSVRQYLTKLTRNKLSN 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 331800 342919 - Bpe019472.1 Bpe06g00029 104967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00029 677 MobiDBLite consensus disorder prediction 434 455 - -
Bpe06g00029 677 PANTHER FHA DOMAIN PROTEIN 1 131 - -
Bpe06g00029 677 SMART FHA_2 576 633 IPR000253 GO:0005515
Bpe06g00029 677 SUPERFAMILY SMAD/FHA domain 565 658 IPR008984 GO:0005515
Bpe06g00029 677 MobiDBLite consensus disorder prediction 434 458 - -
Bpe06g00029 677 Pfam FHA domain 578 649 IPR000253 GO:0005515
Bpe06g00029 677 PANTHER MICROSPHERULE PROTEIN 1 200 674 IPR037912 GO:0002151|GO:0031011|GO:0071339
Bpe06g00029 677 CDD FHA 573 657 IPR000253 GO:0005515
Bpe06g00029 677 PANTHER FHA DOMAIN PROTEIN 200 674 - -
Bpe06g00029 677 PANTHER MICROSPHERULE PROTEIN 1 1 131 IPR037912 GO:0002151|GO:0031011|GO:0071339
Bpe06g00029 677 ProSiteProfiles Forkhead-associated (FHA) domain profile. 577 633 IPR000253 GO:0005515
Bpe06g00029 677 Pfam N-terminal region of micro-spherule protein 10 72 IPR025999 -
Bpe06g00029 677 Gene3D - 526 669 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00029 - - - qsu:112033589 463.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00366 Bpe-Chr2:2408666 Bpe06g00029 Bpe-Chr6:331800 5.39E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1068 . . Bda04g00031 . . . Bma09g00099 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1662 Cone9ag1585 . . . . Blo05g00819 . . . . Bpe06g00029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001875 2 6 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 11 13 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00029 Bpe_Chr06 FPKM 20.208986 21.425854 16.909355 17.699713 68.965492 68.512451 72.789108 13.183086 12.227459 11.914723