Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00030 ATGGGGCGTGGAAAGATCGAGATCAAGCGGATCGAAAACTCCACAAACAGGCAGGTCACCTACTCCAAACGAAGAAATGGTATTTTCAAGAAAGCTAAAGAACTGGCTGTTCTTTGCGATGCTAAGGTCTCTCTTTTGATGTTTTCTGATACTGGCAAGCTTACCGAGTATACTAGCCTTAACACCACAACAAAGAAGATCTACGATCAGTATCAGAGTGTGACAGGGATTGATCTGTGGAGCGCACACTATAAGAGAATGGAAGAAAACTTGAGGAGGTTGAAGGAAATCAACTACAACTTGAGGAGGGAGATCAGGCAGAGGATAGGCAAAGATTTGAACGATCTTGACTACAAGCAACTCCATAGTCTTGAGCAAAACATATCTTCTCCCTTGAAAGCCATACGCGAGCGAAAGGTTCAGTTCCTTAACTTCTGA 438 43.38 MGRGKIEIKRIENSTNRQVTYSKRRNGIFKKAKELAVLCDAKVSLLMFSDTGKLTEYTSLNTTTKKIYDQYQSVTGIDLWSAHYKRMEENLRRLKEINYNLRREIRQRIGKDLNDLDYKQLHSLEQNISSPLKAIRERKVQFLNF 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 367437 368175 - Bpe019473.1 Bpe06g00030 104968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00030 145 ProSiteProfiles K-box domain profile. 84 145 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe06g00030 145 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe06g00030 145 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe06g00030 145 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe06g00030 145 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 141 - -
Bpe06g00030 145 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe06g00030 145 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bpe06g00030 145 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 141 - -
Bpe06g00030 145 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bpe06g00030 145 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe06g00030 145 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bpe06g00030 145 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe06g00030 145 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe06g00030 145 Coils Coil 77 104 - -
Bpe06g00030 145 Pfam K-box region 82 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe06g00030 Bpe10g00142 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00229 Bpe-Chr4:1552256 Bpe06g00030 Bpe-Chr6:367437 3.70E-60 dispersed
Bpe06g00030 Bpe-Chr6:367437 Bpe02g02307 Bpe-Chr2:23754926 9.42E-35 dispersed
Bpe10g00879 Bpe-Chr10:14576549 Bpe06g00030 Bpe-Chr6:367437 3.94E-17 dispersed
Bpe11g01646 Bpe-Chr11:12625769 Bpe06g00030 Bpe-Chr6:367437 1.95E-17 dispersed
Bpe02g00630 Bpe-Chr2:4110782 Bpe06g00030 Bpe-Chr6:367437 9.43E-43 transposed
Bpe10g00142 Bpe-Chr10:2896564 Bpe06g00030 Bpe-Chr6:367437 7.15E-84 wgd
Bpe02g00367 Bpe-Chr2:2414262 Bpe06g00030 Bpe-Chr6:367437 1.82E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21528 PF01486 K-box 1.30E-13 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00030 K09264 - vvi:100233014 207.994