Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00034 ATGGCAGGAGAGGAGGGGCAAGTGATCAGTTGCCATACCGTCGAGGCCTGGATGGAGCAGCTCGAGAAGGGGATTGATTCTAAGAAACTGATTGTCGTCGATTTCACTGCATCATGGTGTGGACCATGCCGTTTCATTGCGCCTTTTCTGTCATCGCTGGCTAAGAAATTTCCAGAAGTGACATTTCTGAAGGTCGATGTTGACGAACTCAAGGTAGAACAGCAACTCTTTTCTCAACACATCATCAATAACCATTTATTTCTTCATCTCTCTGAAAATTCTTCTGCGCAGCCTGTGGCTCAAGATTGGGCAGTGGAGGCAATGCCCACTTTCATGTTCCTGAAGGAGGGGAAGATAGTGGACAAAGTTGTCGGAGGAAAGAAAGACGAGCTGCAGCATACTATAGCCAAGCATACTGGTACAACTTCTGCCTGA 435 47.13 MAGEEGQVISCHTVEAWMEQLEKGIDSKKLIVVDFTASWCGPCRFIAPFLSSLAKKFPEVTFLKVDVDELKVEQQLFSQHIINNHLFLHLSENSSAQPVAQDWAVEAMPTFMFLKEGKIVDKVVGGKKDELQHTIAKHTGTTSA 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 397562 398498 + Bpe019477.2 Bpe06g00034 104972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00034 144 ProSiteProfiles Thioredoxin domain profile. 1 140 IPR013766 -
Bpe06g00034 144 PRINTS Thioredoxin family signature 39 48 - -
Bpe06g00034 144 PRINTS Thioredoxin family signature 104 115 - -
Bpe06g00034 144 PRINTS Thioredoxin family signature 31 39 - -
Bpe06g00034 144 PANTHER THIOREDOXIN 97 141 - -
Bpe06g00034 144 PANTHER THIOREDOXIN 97 141 - -
Bpe06g00034 144 Gene3D Glutaredoxin 1 142 - -
Bpe06g00034 144 SUPERFAMILY Thioredoxin-like 14 139 IPR036249 -
Bpe06g00034 144 CDD TRX_family 19 136 - -
Bpe06g00034 144 PIRSF Thioredoxin 10 80 IPR005746 GO:0015035
Bpe06g00034 144 PIRSF Thioredoxin 72 139 IPR005746 GO:0015035
Bpe06g00034 144 ProSitePatterns Thioredoxin family active site. 32 50 IPR017937 -
Bpe06g00034 144 PANTHER THIOREDOXIN 4 71 - -
Bpe06g00034 144 PANTHER THIOREDOXIN 4 71 - -
Bpe06g00034 144 Pfam Thioredoxin 92 136 IPR013766 -
Bpe06g00034 144 Pfam Thioredoxin 11 72 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00034 K03671 trxA; thioredoxin 1 - qsu:112000873 182.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00104 Bpe-Chr5:1969986 Bpe06g00034 Bpe-Chr6:397562 2.70E-48 dispersed
Bpe06g00034 Bpe-Chr6:397562 Bpe09g00474 Bpe-Chr9:13081959 2.83E-31 dispersed
Bpe02g01711 Bpe-Chr2:19597096 Bpe06g00034 Bpe-Chr6:397562 5.42E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009315 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00034 Bpe_Chr06 FPKM 7.955836 9.52879 5.319722 5.203309 5.489665 3.475996 4.396711 1.65629 1.51539 1.750163