Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00040 ATGGACGTAGTCTCAGTGCTGCACATGAAAGGAGGAAATGGAGATGCAAGCTATGCTACCAACTCTTCAATGCAGAAGAAGGTTATTTCAATGACAAAGCCATTCAGAGAGGAAGCCATAGCCAAGCTCTACAACAACACCATCACGTGCTTAAACATTGCAGACTTGGGCTGTTCTTCCGGTCCCAACACACTCTTCGTGGCGTCCGAAGTTATCAAAATAATGCATAATCTCAGATCAGCGACGGAAACCAAATCCATCGAGTTCCGGGTCTTCTTGAATGATCTTCCTGCAAATGATTTCAATACCCTTTTCCGGTCCCTTCCGAGTTTCTTGGAGAATCTCCGGAGCCAAACCGGAGCCGATCTCGGTCCATGTTTCTTCACCGGAGTTCCCGGTTCTTTCTACGGCCGCCTTTTTCCGACCAATAGCCTGCACTTCGTCCACTCCTCCTACAGCCTCCATTGGATTTCACAGGTTCCGAGAGGGATAGAGGGCAACAAAGGAAACATATACATTTCCAAAACAAGTCCACCCAGCGTTCTCAAAGCTTACTACAACCAATTTCAAAAAGATTTCTCAACATTCTTGAAATGTCGAGGAGAAGAAGTCATTAATGGCGGCTGCATGATTCTTACATTTCTCGGCCGAAGAAGTGAATCCCCGTCTGGCAAAGAATGTTGCCATATTTGGGATCTCCTGGCCACGGCCCTCAATGAAATGGTCGCCGACGGAATCATCAACGAACATGAAGTCAATGCCTTCAACATTCCACATTACACGCCATCCCCCTCTGAACTGAAAACCGAGATTGCGAAAGAAGGATCGTTTTCCGTTAATCAACTCGAAGCTTCAAACATAAGTTGGAATGGGTACTATGACGAGGAAGATCAAATTAACTTACCGAACGAGTTTTTTGAAAGTGGTTCTTACGTCGAGAAGTATACGAGGGCCGTGGCCGAGCCTATGCTCGTTAGTCATTTCGGGGAAGCCATTATAGAAGATGTGTTTTGCAGATTCAGAAGGATTGTTGCAGAGTCCATGAAGAAGGAGAAGCCTGAGTTTGTAAACATCACTGTTTCTTTGACTAGAAAAGAATTGGCCTAA 1107 45.53 MDVVSVLHMKGGNGDASYATNSSMQKKVISMTKPFREEAIAKLYNNTITCLNIADLGCSSGPNTLFVASEVIKIMHNLRSATETKSIEFRVFLNDLPANDFNTLFRSLPSFLENLRSQTGADLGPCFFTGVPGSFYGRLFPTNSLHFVHSSYSLHWISQVPRGIEGNKGNIYISKTSPPSVLKAYYNQFQKDFSTFLKCRGEEVINGGCMILTFLGRRSESPSGKECCHIWDLLATALNEMVADGIINEHEVNAFNIPHYTPSPSELKTEIAKEGSFSVNQLEASNISWNGYYDEEDQINLPNEFFESGSYVEKYTRAVAEPMLVSHFGEAIIEDVFCRFRRIVAESMKKEKPEFVNITVSLTRKELA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 460823 462183 + Bpe019484.1 Bpe06g00040 104978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00040 368 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 1 364 IPR005299 GO:0008168
Bpe06g00040 368 Pfam SAM dependent carboxyl methyltransferase 39 364 IPR005299 GO:0008168
Bpe06g00040 368 Gene3D - 6 351 IPR042086 -
Bpe06g00040 368 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 1 364 - -
Bpe06g00040 368 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 365 IPR029063 -
Bpe06g00040 368 Gene3D Vaccinia Virus protein VP39 21 352 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00040 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - tcc:18610880 483.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00040 Bpe-Chr6:460823 Bpe15g00861 Bpe-Chr15:18583558 6.55E-99 dispersed
Bpe03g00037 Bpe-Chr3:627376 Bpe06g00040 Bpe-Chr6:460823 4.46E-66 transposed
Bpe15g00419 Bpe-Chr15:15751514 Bpe06g00040 Bpe-Chr6:460823 1.01E-95 transposed
Bpe15g00481 Bpe-Chr15:16123857 Bpe06g00040 Bpe-Chr6:460823 3.13E-113 transposed
Bpe02g00376 Bpe-Chr2:2475844 Bpe06g00040 Bpe-Chr6:460823 1.02E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1021 . . . . . . . . . . Cma03g00729 Cma07g00473 . . . . . . . . . . . . . . . . . . . . . . . Lsi01g00657 . . Cme08g00871 . . . . . Bpe06g00040 . . . Cmo03g00756 Cmo07g00471 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00040 Bpe_Chr06 FPKM 7.877886 8.120687 8.172799 8.494653 16.168631 11.842362 16.23311 11.07006 12.331584 15.976611