Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00048 ATGGATGAGATCTGGGAGCGAGCCGTTGAAACTGCGCTAGACGGCCAAACTGACCTTGCCTCGGCCCGTGCCCTGACCTTAGACGGTGCTGTTAAGTGTGCTCAAGGTCGGTTGCCTCCACCGAGTCTTTTGGAGAAGTTCCCTAACCTTCAACACCTTTCGATTGCTAATATTGGCGTCTCATCGCTAGAGCAGTTTCCTCACCTTCCTAACCTACAGAAACTTATTCTATCTGATAATCGGATAGCTGGGGGCCTCGAATTTCTTGTTGAAGCAGGGCTTGATTCTCTCCGAGACCTTGACCTCTCGAACAATAGGATTCAGTATATTGAAGATCTTGAGCCACTTGCGCAGCTAAAGCTTGTGTCACTTGATCTCTACGAGAGTCCAGTTACGAGAGTGAAGGATTATCGATCTAGGGTTTTTGGATTGATTAAATCGCTAAAATATTTGGATAAGATGGATTCTGATGAGAATGAGCGGCCTGAATCTGAGGATGAGGAGGAAGAAGAAGAGGAGGACGAGGAGGAGGATGATCCAGGAAGTGGAGAGATAGACAGGGTCGATCGGGCTTATAGAATGATGAATGGACATAATGATGGAGCCGTTGGGGTTGTTGATGTTGATGAGGATGAAGAGAGTGATGCTGATGAGGAGACTGAGACATCTAGACAGGTAAATGGAACCAATCATCAAGCCAATGGCTTTCGGGTTGCACCTGTGGAAGGAGAGGAAATTGATGAATATGAAGAATGTGATGACGATGAAGATCATGAACTGGGGGAGGAAGAAATTGATGAAGAGGAAGGTGATGATGATGATGATGTGGTGGAGATCCATGAGATTGAGGACAGTGATGGCGAAGAAGATGGGGTTGAGTATGATGAGGATGATGACGAAGATGATGAGGAAGAAGTTGATAATGACGAGGGGGACTTTGCAGAACCAGAGAGTACAGGGCGATTGGCAAGTATGGAAGGTGAAATTGATGGACATGAGCAGGGTGAGGATGATGGAGATGAGGAGGATAATGGAGAGACTGAAGAGGAGCAAGGTGTTGAGGAAGATGTCGAATTTGAAGATGAAGAGGATGGTGAGGAAGAGGATGAAGATTACAGCACAGGGTACTTGGTTCAACCAGTGATGCAGGCTGAGGAAGAAGATGGCGGAGGAAGTGATATGGACCCAGGAAATGACGAAGATAATGATGATGAGCAGGAGGAAGAAGTCGAAGATGATGATGAGGTTGAGTTAATTCAGCCCTCTTCTGCCCACCATAAACGAAAGAGAGAGGAAGAGGAAGAGGAAGAGGAAGAGGGAGACGAAGGAGAGAGTGAAGAGGATGATGAAGGGGAAGATGTGGTCAATCACAAGAAGTCGACAAAGAAGCATCGATAA 1398 46.57 MDEIWERAVETALDGQTDLASARALTLDGAVKCAQGRLPPPSLLEKFPNLQHLSIANIGVSSLEQFPHLPNLQKLILSDNRIAGGLEFLVEAGLDSLRDLDLSNNRIQYIEDLEPLAQLKLVSLDLYESPVTRVKDYRSRVFGLIKSLKYLDKMDSDENERPESEDEEEEEEEDEEEDDPGSGEIDRVDRAYRMMNGHNDGAVGVVDVDEDEESDADEETETSRQVNGTNHQANGFRVAPVEGEEIDEYEECDDDEDHELGEEEIDEEEGDDDDDVVEIHEIEDSDGEEDGVEYDEDDDEDDEEEVDNDEGDFAEPESTGRLASMEGEIDGHEQGEDDGDEEDNGETEEEQGVEEDVEFEDEEDGEEEDEDYSTGYLVQPVMQAEEEDGGGSDMDPGNDEDNDDEQEEEVEDDDEVELIQPSSAHHKRKREEEEEEEEEGDEGESEEDDEGEDVVNHKKSTKKHR 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 578508 580809 - Bpe019493.1 Bpe06g00048 104986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00048 465 Coils Coil 154 174 - -
Bpe06g00048 465 PANTHER ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32-RELATED PROTEIN 2 2 309 - -
Bpe06g00048 465 MobiDBLite consensus disorder prediction 159 182 - -
Bpe06g00048 465 MobiDBLite consensus disorder prediction 331 373 - -
Bpe06g00048 465 MobiDBLite consensus disorder prediction 244 313 - -
Bpe06g00048 465 Pfam Leucine-rich repeat 59 166 - -
Bpe06g00048 465 MobiDBLite consensus disorder prediction 198 465 - -
Bpe06g00048 465 MobiDBLite consensus disorder prediction 418 433 - -
Bpe06g00048 465 PANTHER ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 2 309 IPR045081 -
Bpe06g00048 465 MobiDBLite consensus disorder prediction 434 451 - -
Bpe06g00048 465 MobiDBLite consensus disorder prediction 154 185 - -
Bpe06g00048 465 Gene3D Ribonuclease Inhibitor 5 167 IPR032675 -
Bpe06g00048 465 MobiDBLite consensus disorder prediction 388 417 - -
Bpe06g00048 465 ProSiteProfiles Leucine-rich repeat profile. 96 117 IPR001611 GO:0005515
Bpe06g00048 465 SUPERFAMILY L domain-like 40 157 - -
Bpe06g00048 465 SMART LRR_sd22_2 69 88 - -
Bpe06g00048 465 SMART LRR_sd22_2 94 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00048 - - - zju:107424836 416.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00048 Bpe-Chr6:578508 Bpe10g01004 Bpe-Chr10:15446512 1.79E-06 dispersed
Bpe07g00405 Bpe-Chr7:3900607 Bpe06g00048 Bpe-Chr6:578508 3.45E-06 transposed
Bpe10g00113 Bpe-Chr10:1946648 Bpe06g00048 Bpe-Chr6:578508 1.00E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g950 . . Bda04g00056 Bda10g00127 . . Bma09g00073 Bma15g01001 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0802 Cone12ag0748 . . . . . . Blo05g00791 Blo06g00131 . . . Bpe06g00048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015391 2 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 12
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00048 Bpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0