Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00052 ATGAAGTCAAAGCTTTTTACTGTCCTGATCTTTCTTCTTCTCTCTTCTTCTTTACGAGCGTCTGGTTTTGACGACGGCGAGACCTTTCTGGCTCCGGTGGTGAAGAGAGAGGAGAGGACATCACTGGTTGTAACAGATTGCGGAGAGATCTCCGCCGTCGATATCAGAGATGGAACGCGATCGGAACGCTACCATATCCAGTTCATCACCCTGGAACCTAACTCCCTCTTTCTTCCTGTTCTTCTCCAAGCTGACATGGTCTTCTACGTTCACACTGGGAGAGGAAGGTTGCACTGGGGAGACGATGATGAGATGAGGAAGGTGAACCTAAGGCGAGGAGATGTTTACAGGCTTCATTCTGGGTCTGTGTTTTATATGCGGAGCAATTTAGAGACCGAGAGAGAAAAGCTTAGGATCTTTGCGTTATTTGCTAATCCAAAAGATGAATTATACGAGCGGAAAATCGGACCGTACTCAAGCATCATCGACCTAGTTCGGGGTTTTGATCGGAAAGTTCTCCGGGAAGCATTCAAGGTCTCAGAGGAGGTGATAGAAGAAATGGTAAGTGGGGTGAGGCCACCTCAAATAATTCACGCTGTTTCGACGAAGAAGAAGAAGACTTTCTGGGAGATGGAGGCTCGGTTCTTGAAATCATTTTCAGAAGGGAGAAACTCCATTGAAAACAACAAAAAGAAGCAATCGAAGGGGTCGATGATGGGTCCGCATTGGAATCCAATGGCGAATGAGGTAGCGATAGTACTGAAAGGGAGGGGGATGGTTCGAGTTGTCCGTTCGAACGAGAAGAACAATACAGAGTGCAGTAGTACCAGGTTTAGAGTGGAGGAGGGAGATGTATTTGCAGTTCCAAGATTCCATCCAATGGCTCAGATGTCGTTCAACAACGGATCAATGGTTTTCATGGGGTTCAGTACAACGACGAGGAGAAATCATCCACAGTTTCTGGCAGGGAAAAGCTCGGTTTTGCGAGCTTTAGACAAGGATGTTATGGCGGTTTCGTTTAATGTGAATGCGAGTGTAATTGAGCAGGTTCTGGGAAAGCAGGATGAGTCGGTCATATTGGAGTGTGTTTCCTGCGCTGAGGAAGAGGAGAGGGTGATGGAAGAGGAGATAGAGAGAGAAAGGGAGGCTAGAAAGAGGGAAGAAGAGGAAGCTAGGAAAAGAGAGGAGGAAGAAGAGAGGAAGAGGAGAGAAGAAGAAGAAGAAGAGGAAGCAAGAAGAGAGGAAGAGGAACAGAAGAGAAGAGAAGAAGAAGAAGAAGAAGAGGAAGCCAGAAGAGAGGAAGAGGATCGAAAGAGAAGAGAAGAGGAGGAACAAAAGAGAAGAAAAGAGGAAGAGGAGGAACGAGAAAGAAGAGAAGAAGAGGAAGAACGAGAAAGAAGAGAAGAAGAGGAGGAAGCCAGAAGAGAGGAAGAAGAACGAAAGAGAAGACGAAAGGAGGAGGAAGCCAGAAGGGAGGAAGAGAAAAGGAGAAGAAGAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGGAAAGGAGAAGGAGAAGGGAAAGAGAGTGGGAAGAAGAAGAGGCTAGAAAACAGGAAGAAGAGAGACAAAAGAGAGCCTGA 1614 46.47 MKSKLFTVLIFLLLSSSLRASGFDDGETFLAPVVKREERTSLVVTDCGEISAVDIRDGTRSERYHIQFITLEPNSLFLPVLLQADMVFYVHTGRGRLHWGDDDEMRKVNLRRGDVYRLHSGSVFYMRSNLETEREKLRIFALFANPKDELYERKIGPYSSIIDLVRGFDRKVLREAFKVSEEVIEEMVSGVRPPQIIHAVSTKKKKTFWEMEARFLKSFSEGRNSIENNKKKQSKGSMMGPHWNPMANEVAIVLKGRGMVRVVRSNEKNNTECSSTRFRVEEGDVFAVPRFHPMAQMSFNNGSMVFMGFSTTTRRNHPQFLAGKSSVLRALDKDVMAVSFNVNASVIEQVLGKQDESVILECVSCAEEEERVMEEEIEREREARKREEEEARKREEEEERKRREEEEEEEARREEEEQKRREEEEEEEEARREEEDRKRREEEEQKRRKEEEEERERREEEEERERREEEEEARREEEERKRRRKEEEARREEEKRRRREEEEEEEEEEERERRRRREREWEEEEARKQEEERQKRA 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 622761 624879 - Bpe019497.1 Bpe06g00052 104990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00052 537 Gene3D Jelly Rolls 224 374 IPR014710 -
Bpe06g00052 537 CDD cupin_7S_vicilin-like_C 234 357 - -
Bpe06g00052 537 CDD cupin_7S_vicilin-like_N 42 205 - -
Bpe06g00052 537 Gene3D Jelly Rolls 33 208 IPR014710 -
Bpe06g00052 537 MobiDBLite consensus disorder prediction 509 537 - -
Bpe06g00052 537 PANTHER PREPROMP73 5 230 - -
Bpe06g00052 537 PANTHER PREPROMP73 234 407 - -
Bpe06g00052 537 MobiDBLite consensus disorder prediction 376 419 - -
Bpe06g00052 537 Pfam Cupin 48 183 IPR006045 -
Bpe06g00052 537 Pfam Cupin 234 345 IPR006045 -
Bpe06g00052 537 PANTHER OS03G0336100 PROTEIN-RELATED 5 230 - -
Bpe06g00052 537 PANTHER OS03G0336100 PROTEIN-RELATED 234 407 - -
Bpe06g00052 537 Coils Coil 363 537 - -
Bpe06g00052 537 MobiDBLite consensus disorder prediction 432 502 - -
Bpe06g00052 537 SMART Cupin_1_3 217 348 IPR006045 -
Bpe06g00052 537 SMART Cupin_1_3 32 185 IPR006045 -
Bpe06g00052 537 MobiDBLite consensus disorder prediction 371 537 - -
Bpe06g00052 537 SUPERFAMILY RmlC-like cupins 37 357 IPR011051 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00052 - - - jre:108995264 423.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00172 Bpe-Chr1:1029052 Bpe06g00052 Bpe-Chr6:622761 8.53E-16 dispersed
Bpe06g00052 Bpe-Chr6:622761 Bpe13g00598 Bpe-Chr13:13074368 5.94E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g934 . . Bda04g00062 . . . Bma09g00063 . . . Cma03g00763 . . . Sed14g1100 . Cpe10g00599 Bhi03g01275 Tan03g1963 Cmetu08g1687 . Hepe04g1494 . . . . . . . . . . . . Cone9ag1535 Lsi01g00692 . . Cme08g00830 Blo05g00786 . . . . Bpe06g00052 . . . Cmo03g00792 . . . . . . . . . . . . . . . . . . . . . . Csa06g03224 Chy02g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012868 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00052 Bpe_Chr06 FPKM 33.587746 33.536819 101.715233 102.168808 1.770218 1.68558 1.935618 74.693733 89.262222 73.64257