Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00056 ATGCCGACGTGGAGAGAGAGGGAGAATAACAAGAGGAGAGAGAGAAGAAGGAGAGCCATTGCTGCTAAGATTTACGCTGGTTTGAGAACTCAGGGAAACTATAAGCTTCCTAAGCACTGCGATAATAACGAGGTTTTGAAAGCTCTCTGTGCTGAAGCTGGTTGGGTTGTCGAAGAAGATGGAACTACATACAGAAAGGGATATAAGCCTCCAATGGCGGAAATTGCAGCAAACATGGTGAACCTGAGTGCTTGTTCATCGCTCCAGCCAAGCCCGCAATCTTCCTCCTTCCCTAGCCCTCTACCATCCTACCCGGCCAGCCCTTCATCTTCTTCATTTCCCAGCCCTACCCGTTTCGATCAGAATCCGTCCACTTATCTTCTGCCATTTCTTCGAAACATAGCTTCCATTTCTGCAAATCTCCCTCCTCTGAGAATATCAAACAGCGCCCCTGTAACTCCACCTCTTTCTTCTCCGACCTCGAGAGGCTCGAAGCGGAAACCAGACTGGGAATCGCTGTCTAACGGATCCTCTTTTTGCCACCCCCTTTTTGCCGTCTCCGCTCCGGCGAGCCCCACGCGGCGGCACCATCTACCTCCGGCGACGATTCCGGAGTGCGACGAGTCCGATGCTTCCACGGTTGACTCCGGCAGGTGGGTCAGTTTTCAGACGGTCGGGCCGTCGAATATTCCTACTTCTCCGACGTTCAATTTGACGAAGCCGTTGATCCAGCAGTGTTCTTTGCACGACGCCGTCGAGGGGCGAGTGCCGATGTGTTCAGACTTCGAGTTTGAGAGTGGAAGAGTGAAGGCATGGGAGGGCGAGAAAATTCACGAGGTCGGCGCCGATGATTTAGAGCTCACCCTCGGAAGTGGCAAGTCCCACGGCGGCTAA 894 53.24 MPTWRERENNKRRERRRRAIAAKIYAGLRTQGNYKLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGYKPPMAEIAANMVNLSACSSLQPSPQSSSFPSPLPSYPASPSSSSFPSPTRFDQNPSTYLLPFLRNIASISANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESLSNGSSFCHPLFAVSAPASPTRRHHLPPATIPECDESDASTVDSGRWVSFQTVGPSNIPTSPTFNLTKPLIQQCSLHDAVEGRVPMCSDFEFESGRVKAWEGEKIHEVGADDLELTLGSGKSHGG 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 673237 674337 - Bpe019503.1 Bpe06g00056 104994

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00056 297 MobiDBLite consensus disorder prediction 146 163 - -
Bpe06g00056 297 MobiDBLite consensus disorder prediction 95 109 - -
Bpe06g00056 297 MobiDBLite consensus disorder prediction 146 173 - -
Bpe06g00056 297 PANTHER BES1/BZR1 HOMOLOG PROTEIN 1 1 295 - -
Bpe06g00056 297 MobiDBLite consensus disorder prediction 89 118 - -
Bpe06g00056 297 Pfam BES1/BZR1 plant transcription factor, N-terminal 1 122 IPR008540 -
Bpe06g00056 297 MobiDBLite consensus disorder prediction 191 210 - -
Bpe06g00056 297 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 295 IPR033264 GO:0003700|GO:0006351|GO:0009742
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00056 K14503 BZR1_2; brassinosteroid resistant 1/2 - jre:108995355 409.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00874 Bpe-Chr3:28501935 Bpe06g00056 Bpe-Chr6:673237 7.91E-38 dispersed
Bpe04g00207 Bpe-Chr4:1420953 Bpe06g00056 Bpe-Chr6:673237 5.98E-79 dispersed
Bpe06g00056 Bpe-Chr6:673237 Bpe09g00267 Bpe-Chr9:1962330 2.15E-41 dispersed
Bpe10g00104 Bpe-Chr10:1582635 Bpe06g00056 Bpe-Chr6:673237 3.64E-154 wgd
Bpe02g00402 Bpe-Chr2:2617186 Bpe06g00056 Bpe-Chr6:673237 1.45E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g920 . . . . . . Bma09g00060 . . . Cma03g00775 Cma07g00508 Car03g00704 Car07g00444 Sed14g1094 . . Bhi03g01260 Tan03g1950 Cmetu08g1008 . Hepe04g1483 . . . . . . . . . Cone8ag0795 . . . Lsi01g00704 . . . . Blo06g00124 . . . Bpe06g00056 . . . Cmo03g00806 Cmo07g00506 . . . . . . . . . . . . . . . . . . . . . . Chy02g00673 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe02g00402 BCT 2 279 BZR Transcription Factor Family AT1G75080 63.9 2.2e-84 309.3
Bpe04g00207 BCT 33 317 BZR Transcription Factor Family AT1G75080 63.6 1.6e-82 303.1
Bpe06g00056 . 19 296 BZR Transcription Factor Family AT1G75080 57.1 3.4e-77 285.4
Bpe10g00104 . 27 306 BZR Transcription Factor Family AT1G75080 55.4 3.4e-77 285.4
Bpe02g00402 BCT 2 277 BZR Transcription Factor Family AT1G19350 63.4 1.1e-85 313.5
Bpe04g00207 BCT 33 318 BZR Transcription Factor Family AT1G19350 60.6 1.9e-80 296.2
Bpe06g00056 . 19 295 BZR Transcription Factor Family AT1G19350 58.0 3.4e-77 285.4
Bpe10g00104 . 27 305 BZR Transcription Factor Family AT1G19350 57.4 3.7e-76 282.0
Bpe06g00056 . 1 297 BZR Transcription Factor Family AT3G50750 58.0 4.0e-76 281.6
Bpe10g00104 . 2 300 BZR Transcription Factor Family AT3G50750 56.1 9.8e-75 276.9
Bpe11g01121 . 77 327 BZR Transcription Factor Family AT4G18890 54.7 2.1e-53 205.7
Bpe03g00874 CCT 122 332 BZR Transcription Factor Family AT4G18890 50.7 2.3e-44 175.6
Bpe11g01121 . 1 327 BZR Transcription Factor Family AT1G78700 66.8 9.4e-109 390.2
Bpe03g00874 CCT 1 332 BZR Transcription Factor Family AT1G78700 66.4 6.7e-107 384.0
Bpe09g00267 CCT 1 312 BZR Transcription Factor Family AT1G78700 66.6 1.8e-96 349.4
Bpe10g00104 . 27 200 BZR Transcription Factor Family AT4G36780 75.7 3.5e-61 231.9
Bpe06g00056 . 19 196 BZR Transcription Factor Family AT4G36780 72.2 7.8e-61 230.7
Bpe04g00207 BCT 33 212 BZR Transcription Factor Family AT4G36780 55.7 1.6e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21533 PF05687 BES1_N 4.20E-61 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00056 Bpe_Chr06 FPKM 0.0 0.0 6.619431 7.811362 25.441463 24.422915 26.818508 0.0 0.0 0.0