Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00062 ATGGCGGATCACTCTGACCCTTCGCCTCTCATGGCTCCTTCACCGATCACTGAGAAAGGGGAAATTGACCTTGAAGCTGGGCCTGGAGAACAAATTCAGTGCCGAATTTGCCTCGAGACTGACGGTCGGGATTTTATTGCTCCCTGCAAATGCAAAGGAACGTCTAAATATGTTCATAGAGAGTGCTTGGATCATTGGCGAGCTGTGAAGGAAGGATTTGCTTTCGCTCACTGCACCACCTGCAAAGCTCCTTACCATTTACGAGTTTACACTTTTGCTGATAGAAAATGGCGAACACTCAAATTTCGATTTTTCGTGACAAGGGACATTTTATTTATATTTCTGGTGGTTCAGCTTGAGCGCTTCTGTTTTTTGCCTTGCTTGGTCTATCGGGGTGTTTTATTACATGTTATGATCGAAGAGTTAGAAATGATTTGGCTCAGCCTTGTAGAGAATTATGTCTATGTTGCTGCCACCCTGGATTGTCATTTACCTGGCACTCTCTGTATGTGGACTGACTGTACAACTTGCTTTGAAAGTTGTGCCACTATGTCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCTGGGCTACCATTACTATTTATAATGGCTTTGATTGTTCTTGGTCTTTTCACGGTGATCGGGATATTTTATAGTGTTCTAGTGGCTACTATGGTGGGACAACGAATTTGGCAACGACATTATCACATACTTGCGAAGAGAATGCTAACCAAAGTGACTGATATTCTTTTGTTCTGTCAGGAGTATGTAGTCGAGGATGTGGATGGTGAGATCACGGGAACTGACTGGTCTCCTCCACCGCTTCCACCCGAGCATGTTCAACAGCTGAAAACACTTGGTCTCCTCTGA 876 44.63 MADHSDPSPLMAPSPITEKGEIDLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVYTFADRKWRTLKFRFFVTRDILFIFLVVQLERFCFLPCLVYRGVLLHVMIEELEMIWLSLVENYVYVAATLDCHLPGTLCMWTDCTTCFESCATMSTECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKVTDILLFCQEYVVEDVDGEITGTDWSPPPLPPEHVQQLKTLGLL 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 729570 732815 + Bpe019509.1 Bpe06g00062 105000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00062 291 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 120 - -
Bpe06g00062 291 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 159 291 - -
Bpe06g00062 291 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Bpe06g00062 291 PANTHER BNAA04G12620D PROTEIN 1 120 - -
Bpe06g00062 291 PANTHER BNAA04G12620D PROTEIN 159 291 - -
Bpe06g00062 291 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Bpe06g00062 291 SMART ringv_2 33 82 IPR011016 GO:0008270
Bpe06g00062 291 CDD RING_CH-C4HC3_MARCH 34 82 - -
Bpe06g00062 291 SUPERFAMILY RING/U-box 30 86 - -
Bpe06g00062 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 93 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00498 Bpe-Chr1:3182327 Bpe06g00062 Bpe-Chr6:729570 2.58E-59 dispersed
Bpe03g00704 Bpe-Chr3:27205001 Bpe06g00062 Bpe-Chr6:729570 6.71E-43 dispersed
Bpe06g00062 Bpe-Chr6:729570 Bpe11g01642 Bpe-Chr11:12540446 1.16E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00062 - - csin:114258189 438.343