Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00067 ATGTCTTCAGAAACAAGATTGAAACATAAGCTCAATAGGAAACTCAAACTTAAAACCACGAAGTTTATGAGTATTACTGATGAAAATAGACAGACTAGAGATGTTGGCAGTGTAAAATTTTGTGATAAAGAGACAGGTGACAAGAGGAATTCAAAAAAAGATGTGAAGAAGATTATTGCCGGTAAAGCAAGTGGGGAAAAGTTTCAGGCAAAAGAAAATAATTTGCTAAGAAAGAAAATTTATGTTAGTAGAAGCAGTAATCTAAAGAGAAAAGTTCAGAGTCGTGGAACTCCTAGAAGCAGGCCGTCTTCTCATGACTTCAAATATGCAGTTGAAAGTACTCAAGCATCTAAAGAAAGAAGGATAATTAAAAATAAGAAAGAACAACTGCAGAATAGGGAATCAATTAGCATGGATGTTGGTCAAAGTGGTTCATTAAAGCCATTTACCAAAAGAAAAACAACATTGGGCAGACGCTTGAATATATATCAGCAAAAGTCGCCAGATTTTCCTCCTAAAAGACAAGTGTCAAACAAAAAGAAAGAAGATAAGGATTTCGGGTCCCTAGATGATAAACCAAAGAAGAAGAAGCGTGTAATTCGGCTAGACCCATGTGATATCTCTAACAAGCGGTTGGATGATGGAATAATAGCTAATGAAAATATGGACACGAAGAATATCGATTTCGTGAAGAAAAATGAATTGTCAAAGAATGCTGAATTTCGTGCAATACAACCTAGTTCCTCAATCATTTCCTTTGTGGAAGATAATATGTTAGGTCGGAGGCGTTCTATTGAACTTCAGAAAGCTGGCTACAACACTGATTTGTCTGCTCCGCTTGATAACATCCCCTTCTCAACCAGCAAAGAGAGAGAGCGAACTGAAGAAAATATATTTAGAAACAAATTGACTTTTTTTGCTGCTGCTAAAGTTTCTTCATCATTTCCTCCTCCTGAACTCCCTGAGGTTGCATTTGCAGGAAGATCAAATGTGGGGAAGTCATCGATGCTTAATGCTCTCACCAGACAATGGGGTGTTGCACGAACATCGGACAAGCCTGGCCTGACTCAGACGATTAATTTTTTCAACCTTGGAGCAAAACTTAATTTGGTTGATTTGCCTGGATATGGATTTGCTTATGCGAAGGAAGAAGTTAAAGAGTCTTGGGAGGAACTCGTAAAGGAATATGTTTCAACAAGGGGTTGTCTAAAACGAGTATGCCTTCTTATCGACACAAAATGGGGTATGAAGCCACGGGATCATGAACTCATTGATTTGATGGAGAGATCTCAAACAAAGTATCAAATTGTCTTAACCAAGACAGATGTGGTCTTTCCGGGCGACGTGGCACGACGTGCTATGCAAATTGAAGAGAAGCTTAAGCGTAACAAGTCTGTTGTCGAGCCTGTGATGATGGTAAGTTCAAAATCTGGTGCTGGCATTAGAAGTTTAAGAACTGTGCTGGCGAAGATTAGTAGGTTCGCCAAGATCTGA 1494 38.76 MSSETRLKHKLNRKLKLKTTKFMSITDENRQTRDVGSVKFCDKETGDKRNSKKDVKKIIAGKASGEKFQAKENNLLRKKIYVSRSSNLKRKVQSRGTPRSRPSSHDFKYAVESTQASKERRIIKNKKEQLQNRESISMDVGQSGSLKPFTKRKTTLGRRLNIYQQKSPDFPPKRQVSNKKKEDKDFGSLDDKPKKKKRVIRLDPCDISNKRLDDGIIANENMDTKNIDFVKKNELSKNAEFRAIQPSSSIISFVEDNMLGRRRSIELQKAGYNTDLSAPLDNIPFSTSKERERTEENIFRNKLTFFAAAKVSSSFPPPELPEVAFAGRSNVGKSSMLNALTRQWGVARTSDKPGLTQTINFFNLGAKLNLVDLPGYGFAYAKEEVKESWEELVKEYVSTRGCLKRVCLLIDTKWGMKPRDHELIDLMERSQTKYQIVLTKTDVVFPGDVARRAMQIEEKLKRNKSVVEPVMMVSSKSGAGIRSLRTVLAKISRFAKI 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 777670 780958 + Bpe019514.1 Bpe06g00067 105005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00067 497 CDD YihA_EngB 322 491 IPR030393 GO:0005525
Bpe06g00067 497 MobiDBLite consensus disorder prediction 173 197 - -
Bpe06g00067 497 PANTHER EXPRESSED PROTEIN 19 496 - -
Bpe06g00067 497 TIGRFAM small_GTP: small GTP-binding protein domain 322 486 IPR005225 GO:0005525
Bpe06g00067 497 Pfam 50S ribosome-binding GTPase 322 440 IPR006073 GO:0005525
Bpe06g00067 497 ProSiteProfiles EngB-type guanine nucleotide-binding (G) domain profile. 319 494 IPR030393 GO:0005525
Bpe06g00067 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 490 IPR027417 -
Bpe06g00067 497 Gene3D - 297 495 IPR027417 -
Bpe06g00067 497 MobiDBLite consensus disorder prediction 157 172 - -
Bpe06g00067 497 MobiDBLite consensus disorder prediction 101 133 - -
Bpe06g00067 497 Hamap Probable GTP-binding protein EngB [engB]. 307 492 IPR019987 GO:0005525
Bpe06g00067 497 MobiDBLite consensus disorder prediction 87 197 - -
Bpe06g00067 497 MobiDBLite consensus disorder prediction 134 150 - -
Bpe06g00067 497 TIGRFAM GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 304 488 IPR019987 GO:0005525
Bpe06g00067 497 Coils Coil 113 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00067 - - - vvi:100255308 546.584
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe06g00067 Bpe15g00448 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00067 Bpe-Chr6:777670 Bpe15g00288 Bpe-Chr15:14375910 1.72E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g874 . . . . Bpe15g00448 . . . Cmo04g00855 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe06g00067 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00688 . . Cme02g00903
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009217 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00067 Bpe_Chr06 FPKM 25.762712 27.11063 10.063348 9.514498 16.140684 12.936905 14.676335 20.728079 19.870386 20.499559