Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00083 ATGTCAAACTCCGGAGAATCTTCTTTCAATCCGGCAGGATTTGCCTGTGAACCTTTCCGACGTGGTGCAGTCGGTGATGGTGATCCTCGGGTACCGTTACGGAACTTGTCAACGCTGCGCGGGAGAATGGATTCGGTGCAGCGGTTTCTATCCGAATCGGTCAACAGAGGAACTTTGATCGGGAAGGATCAGATGGAAATGGTATCTTCTGAGATATCCTGGTCGATTCAAGAGATCATCGTTAATGGCACAAGGCTGCTCGCTTGTGCGCAGAAACCGATATCGATGGAGTCCACTTCAGAGGCAGCCGGAACACCATCAAATTCGCCGGGAAGAGTTTCTTCGATGAGTAATTTTCGCCCTGGAAAAAGTAAGAAGGAACTGAAATCGGAGGATGTGGAGGAAGATGCGATAACCGAGACCGGAGATTATGAAACCGATTGTGACATTGTTGAGCTAGACGCCGTGGAATTACTGGCCGAGTGTATCCATTTCTGCGAAATCTGTGGAAAAGCATTCAAACGTGATGCGAATCTGAGACTGCACAAGCGCGCTCACGGAAACCAGTTCAAGACTCTGGAGGCTCTGGCGCAGCCGCCGGAAAAGGTCGAGAAATCGAGAACGAGGAGAACCGATTTTTCGTGCCCTTACAAACTATGTAACCGCAATAAACCTCACAAGAACTTCAAGCCTCTGAAATCGGCGATCTGCGTGAGCAATCACTTCAAGCGGAGCCATTGGCCTAAGCTGTATACGTGTAATCGATGCAACAAGAAGAGCTTCTCCGTTTTGGCCGATTTAAAGAGCCACCTGAAGCACTGCGGAGAGCCAAAATGGCGATGCTCGTGCGGCGTGAGCTTCTCGCGCGAGGACAAGCTGTTTGCGCACGTTGCGCTGTTCGAGGGCCACATGCCGGCAGTAATGGATGAAAACGAGAGGGGAAAGGGAAAGGCTGCGTCGGCGGAAGTAGAGGAGAAGGAAAGAGATTGGAATTGGTCGGAAGATGGGTTTTTCGATGGGCTGCCTGAGGAGTTCAGCAGATTAGAGAAGTATTGCTTAGAAAATGCATTTGGGTTCAGAGATGGCGTAGATTCTGGACTGGGAAATTCTTGA 1113 50.13 MSNSGESSFNPAGFACEPFRRGAVGDGDPRVPLRNLSTLRGRMDSVQRFLSESVNRGTLIGKDQMEMVSSEISWSIQEIIVNGTRLLACAQKPISMESTSEAAGTPSNSPGRVSSMSNFRPGKSKKELKSEDVEEDAITETGDYETDCDIVELDAVELLAECIHFCEICGKAFKRDANLRLHKRAHGNQFKTLEALAQPPEKVEKSRTRRTDFSCPYKLCNRNKPHKNFKPLKSAICVSNHFKRSHWPKLYTCNRCNKKSFSVLADLKSHLKHCGEPKWRCSCGVSFSREDKLFAHVALFEGHMPAVMDENERGKGKAASAEVEEKERDWNWSEDGFFDGLPEEFSRLEKYCLENAFGFRDGVDSGLGNS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1141493 1142605 - Bpe019530.1 Bpe06g00083 105021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00083 370 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 5 359 IPR044300 GO:0010044|GO:0010447
Bpe06g00083 370 SMART c2h2final6 213 246 IPR013087 -
Bpe06g00083 370 SMART c2h2final6 164 186 IPR013087 -
Bpe06g00083 370 SMART c2h2final6 251 273 IPR013087 -
Bpe06g00083 370 MobiDBLite consensus disorder prediction 97 136 - -
Bpe06g00083 370 Pfam Zinc finger, C2H2 type 165 186 IPR013087 -
Bpe06g00083 370 Gene3D Classic Zinc Finger 233 307 - -
Bpe06g00083 370 MobiDBLite consensus disorder prediction 97 121 - -
Bpe06g00083 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 191 IPR013087 -
Bpe06g00083 370 SUPERFAMILY beta-beta-alpha zinc fingers 161 187 IPR036236 -
Bpe06g00083 370 Gene3D Classic Zinc Finger 163 186 - -
Bpe06g00083 370 ProSitePatterns Zinc finger C2H2 type domain signature. 166 186 IPR013087 -
Bpe06g00083 370 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 5 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00184 Bpe-Chr2:1277753 Bpe06g00083 Bpe-Chr6:1141493 4.49E-73 dispersed
Bpe06g00083 Bpe-Chr6:1141493 Bpe11g00832 Bpe-Chr11:6202693 2.04E-61 dispersed
Bpe06g00083 Bpe-Chr6:1141493 Bpe08g01298 Bpe-Chr8:14312392 7.44E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21534 PF00096 zf-C2H2 0.00092 CL0361 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00083 - - csin:114317837 384.03