Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00095 ATGGAGTTTGACGACCAAGAGGAGCATGACGAAGAGATGGCGAGCTTCGACTCGCTCGGAAACTCCGGGTCGAGGGTGAAAATGGCGAACTTGGAAGCTACGAGTCCGCAGAGTAGGAAGCCGAGGTACAGAGAGTGTTTGAAGAATCACGCCGTCGGCATCGGTGGCCATGCCCTCGATGGCTGCGGTGAGTTTATGCCGGCCGGAGCAGAAGGAACGCTGGATGGGCTCAAATGCGCCGCCTGCAACTGCCACCGGAACTTCCACCGGAAAGAGACTGACGCCGGAATAGCAGTCGGAGACCATTTCCTTCTCCCTCACCACCCCCACCCGCAGTTCTCACCTTACTACCGAACTCCGGCGGGGTACCTCCACGTTGCACATCACCAGAGGCCGCTGGCCCTTCCATCGACATCAGGCGGCGGAGGAAGCCATAGCCGGGAAGATCAGGAGGACATTTCCAACCCAATCAGCGGCCATGGAGGCAGCGGAAGCGGAGCTTTTGGGAAGAAAAGATTCAGAACGAAGTTCAGTCAAGATCAGAAAGAGAGAATGCTGGGTTTAGCAGAAAGACTCGGATGGAGGATTCAGAAACACGACGACGCCATCGTTCAACAGTTCTGCAACGAAACAGGGGTTAAACGACAGGTTCTTAAAGTTTGGATGCATAACAACAAGCACACTCTCGGAAAAAAACCCTAA 702 54.84 MEFDDQEEHDEEMASFDSLGNSGSRVKMANLEATSPQSRKPRYRECLKNHAVGIGGHALDGCGEFMPAGAEGTLDGLKCAACNCHRNFHRKETDAGIAVGDHFLLPHHPHPQFSPYYRTPAGYLHVAHHQRPLALPSTSGGGGSHSREDQEDISNPISGHGGSGSGAFGKKRFRTKFSQDQKERMLGLAERLGWRIQKHDDAIVQQFCNETGVKRQVLKVWMHNNKHTLGKKP 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1408916 1409617 + Bpe019542.1 Bpe06g00095 105033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00095 233 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 42 92 IPR006456 -
Bpe06g00095 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 232 - -
Bpe06g00095 233 MobiDBLite consensus disorder prediction 1 41 - -
Bpe06g00095 233 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 43 92 IPR006456 -
Bpe06g00095 233 MobiDBLite consensus disorder prediction 17 37 - -
Bpe06g00095 233 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 170 226 IPR006455 -
Bpe06g00095 233 Gene3D - 157 231 - -
Bpe06g00095 233 Pfam ZF-HD protein dimerisation region 42 93 IPR006456 -
Bpe06g00095 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 26 232 - -
Bpe06g00095 233 SUPERFAMILY Homeodomain-like 160 231 IPR009057 -
Bpe06g00095 233 MobiDBLite consensus disorder prediction 133 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00095 - - - csv:101204784 355.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00132 Bpe-Chr2:905065 Bpe06g00095 Bpe-Chr6:1408916 3.03E-83 dispersed
Bpe06g00095 Bpe-Chr6:1408916 Bpe15g00427 Bpe-Chr15:15790946 3.89E-55 dispersed
Bpe06g00095 Bpe-Chr6:1408916 Bpe13g00443 Bpe-Chr13:11967088 7.36E-59 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe06g00095 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.8e-50 195.3
Bpe02g00132 . 50 246 ZF-HD Transcription Factor Family AT5G65410 53.7 1.5e-46 183.3
Bpe02g00132 . 1 242 ZF-HD Transcription Factor Family AT4G24660 53.3 2.8e-59 225.3
Bpe06g00095 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.5 1.5e-55 213.0
Bpe02g01693 . 92 286 ZF-HD Transcription Factor Family AT4G24660 52.3 2.6e-44 175.6
Bpe07g00043 . 1 183 ZF-HD Transcription Factor Family AT1G14440 51.3 3.6e-41 165.6
Bpe13g00443 BCT 137 329 ZF-HD Transcription Factor Family AT2G18350 51.0 1.1e-48 190.3
Bpe11g00081 BCT 24 256 ZF-HD Transcription Factor Family AT5G15210 53.2 3.1e-49 192.2
Bpe14g00177 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 7.0e-49 191.0
Bpe14g00177 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 1.4e-56 216.9
Bpe11g00081 BCT 1 281 ZF-HD Transcription Factor Family AT3G28920 51.4 3.4e-55 212.2
Bpe14g00177 . 24 263 ZF-HD Transcription Factor Family AT5G39760 53.4 9.2e-51 197.6
Bpe11g01458 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 53.5 3.9e-51 198.4
Bpe02g00132 . 1 242 ZF-HD Transcription Factor Family AT4G24660 53.3 2.8e-59 225.3
Bpe06g00095 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.5 1.5e-55 213.0
Bpe02g01693 . 92 286 ZF-HD Transcription Factor Family AT4G24660 52.3 2.6e-44 175.6
Bpe14g00177 . 24 263 ZF-HD Transcription Factor Family AT5G39760 53.4 9.2e-51 197.6
Bpe13g00443 BCT 137 329 ZF-HD Transcription Factor Family AT2G18350 51.0 1.1e-48 190.3
Bpe06g00095 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.8e-50 195.3
Bpe02g00132 . 50 246 ZF-HD Transcription Factor Family AT5G65410 53.7 1.5e-46 183.3
Bpe11g01458 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 53.5 3.9e-51 198.4
Bpe11g00081 BCT 24 256 ZF-HD Transcription Factor Family AT5G15210 53.2 3.1e-49 192.2
Bpe14g00177 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 7.0e-49 191.0
Bpe07g00043 . 1 183 ZF-HD Transcription Factor Family AT1G14440 51.3 3.6e-41 165.6
Bpe14g00177 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 1.4e-56 216.9
Bpe11g00081 BCT 1 281 ZF-HD Transcription Factor Family AT3G28920 51.4 3.4e-55 212.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21536 PF04770 ZF-HD_dimer 3.20E-29 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00095 Bpe_Chr06 FPKM 0.356593 0.0 19.362658 18.10774 0.75516 0.0 0.7194 30.454847 27.894499 26.881554