Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00140 ATGGATCTCATAGCTTATCTATCTCGTCTCTCTACGTCATTGCTGCCTTCCTTCGGAAATATCTTTCACAGACTGGAGCAAATGTGCAATTTCGCTCTTTCTGCCGTTATCGGAAGCATCCTCTCTGCCATTCTCACCTTCTTCTTTGCTCTAGTGGGCACCTTGTTAGGGGCGATGACTGGGGCAGTGATAGGGCAAGAAACCGAGAGTGGTTTTGTGCGTGGGGCTGCGGTGGGAGCAATATCAGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCATCCCTAGTTATCTGGAAATCGGATGAATCCAGAATTGGCTGCGTTCTCTACCTGATTGATGTCATTGTGAGCCTCCTTAGCGGAAGACTAGTTCGAGAAAGGATTGGTCCTGCCATGCTAAGTGCAGTGCAAAGTCAGATGGGTGCAATTGAGAGCTTTGAAGATGTCTCAAACATTTTTGACACGGGCAGTGGAAAAGGACTGCCAGGAGACTCTGTTGAAAAAATTCCAAAACTCATAATTTCTTTCACCAACAACGTGGATGCTTCCTGTTCAGTTTGCCTTCAGGATTTTCAGCTGGGAGAGACGGTGAGAAGCTTACCTCAATGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTTCTAAGACATGGCTCTTGCCCACTATGCAGAAGGGATCTTTGA 690 46.23 MDLIAYLSRLSTSLLPSFGNIFHRLEQMCNFALSAVIGSILSAILTFFFALVGTLLGAMTGAVIGQETESGFVRGAAVGAISGAVFSIEVFESSLVIWKSDESRIGCVLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAIESFEDVSNIFDTGSGKGLPGDSVEKIPKLIISFTNNVDASCSVCLQDFQLGETVRSLPQCHHMFHLPCIDKWLLRHGSCPLCRRDL 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2509541 2511223 - Bpe019594.1 Bpe06g00140 105078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00140 229 CDD RING-H2_PA-TM-RING 184 226 - -
Bpe06g00140 229 Pfam YMGG-like Gly-zipper 50 85 IPR027367 -
Bpe06g00140 229 PANTHER NEP1-INTERACTING PROTEIN 1 13 229 - -
Bpe06g00140 229 Pfam Ring finger domain 183 226 IPR001841 -
Bpe06g00140 229 SUPERFAMILY RING/U-box 174 229 - -
Bpe06g00140 229 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 13 229 IPR044523 -
Bpe06g00140 229 ProSiteProfiles Zinc finger RING-type profile. 184 226 IPR001841 -
Bpe06g00140 229 SMART ring_2 184 225 IPR001841 -
Bpe06g00140 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 229 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00140 Bpe-Chr6:2509541 Bpe13g00399 Bpe-Chr13:11727019 1.92E-119 dispersed
Bpe12g00538 Bpe-Chr12:11251860 Bpe06g00140 Bpe-Chr6:2509541 1.42E-22 dispersed
Bpe06g00140 Bpe-Chr6:2509541 Bpe07g00772 Bpe-Chr7:14216080 7.63E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00140 - - fve:101312761 384.03