Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00159 ATGATTCTGAAATCAGGTGCTAGCCAGTACTTGGAATTCAAGAGCATCGATGCCAGCTATGTGTGCGATGATTATGGGATGTTTTCCAGTGTACCCGACTCTCGCGCCGCTATATTTAAGGACAAGAGTCTCGGGTTGAAAGAGAAGAACCAGTTGATGAGATTTTTCAAGCTGGTTCAGCAGCACTTGGATTCCGACGTTGGTGACGAGCGCACAGGAATTTCTGAGGAAGATTTGGAGACTCCATTTGTTGAATTCTTGAACAAAATGCAGTTGCCTCCAAAGATAAAAACGTACTATTTTGTTTGCTTCAATCTCAAAATTTTTTCCCTGCCTACTTCTCAACTGGCTTTGTTCTTTGAGATAATTCCGGAAGAAATTTTGTTAATATTTTTCCTCACTGTTTTTGTTAGGTTTGCTAATGCACCGGGGGCTTTGATTTATCCTATGTATGGTCAAGGAGAACTAGCTCAAGCATTTTGTCGCCGTGCTGCTGTCAAAGGATGTTTGTACCACAATGGACAATACAAGGGTGTCAAATTAGCTTCAGGTCAGGATATATTCAGCCATGATTTGGTGCTAGACCCATCCTTCATTGTTCCATTGCCATTTTGTTCATCCCCACCAGATCAGTTAAAACAATGTTTTCAAGATTTAAGTCTTAAAGAAGTTAAAGGAAAGGTTGCTAGGGGAATATGTATAGCCAGTTGTTCTTTGATGCCAGATGTATTGAATAGTCTGGTGATATTCCCTCCAAAGACTTTGTTTCCCGAGCAGGTCAGATCAATTCGAGTACTTCAGATTGGGGGAAATTTAGCTGTTTGTCCTTTGGGCATAGATTTTTTATATGGGAATTTACTCATCTTTTTTAGAAACGTCAATTTTGAAGTTGACTCTGTTCACCTTTACTGTTTTTCTAGGTCGATTATTTACATTTCCACAGCTTGTGATGAAGCAGAGCAGGGGAAGAAAATACTACACGCTGCTGTGGATGCAATTATCTCACTTCTCAGTTCTAGAGATCCTGATGGCCGTTCTCCAGGTGAAGATGGCAAAATGGAGGATGCAAAACCCCCTCTACTCTGGAGTACATCGTATATTCAGGAAGTGCCAAGCATGGTAAAGTTTTCAACTTGCCATTTACATGACCATATTTTTTGGTTTCTTTGTCTCTGCTTCTTTTGTTTTGTTCACTGCTATTTTCCTTGTTTTGGACTCTCATTTTGCACTACTTATTGTGGGACAATGGTATTATGA 1257 40.1 MILKSGASQYLEFKSIDASYVCDDYGMFSSVPDSRAAIFKDKSLGLKEKNQLMRFFKLVQQHLDSDVGDERTGISEEDLETPFVEFLNKMQLPPKIKTYYFVCFNLKIFSLPTSQLALFFEIIPEEILLIFFLTVFVRFANAPGALIYPMYGQGELAQAFCRRAAVKGCLYHNGQYKGVKLASGQDIFSHDLVLDPSFIVPLPFCSSPPDQLKQCFQDLSLKEVKGKVARGICIASCSLMPDVLNSLVIFPPKTLFPEQVRSIRVLQIGGNLAVCPLGIDFLYGNLLIFFRNVNFEVDSVHLYCFSRSIIYISTACDEAEQGKKILHAAVDAIISLLSSRDPDGRSPGEDGKMEDAKPPLLWSTSYIQEVPSMVKFSTCHLHDHIFWFLCLCFFCFVHCYFPCFGLSFCTTYCGTMVL 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2977459 2981222 - Bpe019611.2 Bpe06g00159 105097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00159 418 Gene3D - 133 217 IPR036188 -
Bpe06g00159 418 SUPERFAMILY FAD/NAD(P)-binding domain 3 197 IPR036188 -
Bpe06g00159 418 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 218 369 - -
Bpe06g00159 418 Pfam GDP dissociation inhibitor 2 172 IPR018203 GO:0005092|GO:0007264
Bpe06g00159 418 PANTHER RAB GDP-DISSOCIATION INHIBITOR 308 371 IPR018203 GO:0005092|GO:0007264
Bpe06g00159 418 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 31 116 - -
Bpe06g00159 418 PANTHER RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 2 283 - -
Bpe06g00159 418 PANTHER RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 308 371 - -
Bpe06g00159 418 PANTHER RAB GDP-DISSOCIATION INHIBITOR 2 283 IPR018203 GO:0005092|GO:0007264
Bpe06g00159 418 SUPERFAMILY FAD-linked reductases, C-terminal domain 225 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00159 K23460 CHM, CHML; Rab proteins geranylgeranyltransferase component A - cit:102629900 355.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00159 Bpe-Chr6:2977459 Bpe12g00713 Bpe-Chr12:12689652 4.01E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1191 . . Bda04g00217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0894 Cone12ag0865 . . . . . . Blo05g00677 . . . . Bpe06g00159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008575 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 0 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00159 Bpe_Chr06 FPKM 5.99263 6.454787 2.968831 3.164604 5.542304 5.677074 6.598517 0.99084 1.26814 0.883019