Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00162 ATGAGTGTAGTTTACACTCTCTTACTGCTGGTTATTTGGATTGGGATTTCATCAAGTGGTGTCAGCACTAATGTGTCTTCCAGGCCAGATGTTGTAAATATTGGGTCTCTGTTCTCAGTTAGCTCCATGATAGGCAGAGTTGCAAAAATCGCAGTAGAAGCTGCTGTTGAAGATGTGAATGGAGATCCAGCCGTTCTGGGTGGAACAAAGCTTAAACTTACAATGCTAGATTCTAATTACAGCGGATTTCTCGGCATTGTTGAGTCCTTGATGTTCATGGAGAGAGACACAATGGCGATAATTGGCCCCCAAAATTCTGTTACGGCTCACATCATATCACACATTGCAAACGAGCTTCAGATCCCTCTATTATCATTTTCAGCAACAGACCCCACCTTGTGCTCCCTCGAGTTTCCATTTTTCATTAGAACTTCCCAGAATGATCTGTTTCAAATGGCTGCAATAGCTGAAATCGTTCACTACTATGAGTGGAAAGAGGTGATTGCAATCTTCGTAGATGATGATCACGGTCGAAATGGAATTACCGCATTAGGGGATGAGCTTGCTGAAAAGCGTTGTAAAATCTCTTACAAGGTGCCTTTGAGGCCCGATGCCAGCCAAGATGAGGTGACAGATGCATTGGTTAAGGTGGTTTTAACTGAGTCGAGGATACTTGTTGTTCACACCTATGAGACAACAGGATTAGTTGTTCTTCGAGTGGCCAAAAGACTCGGAATGATGGGGTCTGGATATGTGTGGATAACAGCCAATTGGTTATCTTCTCTTTTAGATACTAATTCTCCCCTTCCTGATGAGGCCATGGAAGACATTCAAGGTGTTCTTACTTTGCGAATATACATACCAGACTCGGAGCCCAGAAGAAAATTTGTTTCAAGGTGGAGCAATTTGACTAAGGGAAAAGCCGATAATGGCCCCACTGGATTGAGTACTTATGCTTTTTATGCCTACGACACAGTGTGGGTGCTTGCCCGTGCGATTGACACATTTTTTAATCAAGGAGGAAATCTATCCTTCTCAAATTATTCCAAATTAAGTGGGACTGATAATTTGCATCTCAACTCTATGAGCGTATTTAATGGTGGAAAATTATTGCTTCAGAGAATTTTGGAGGTTAATATGACGGGCATTACAGGTCCATTCAGATTCACTGCAGAAAGAGACTTAATTCAACCTGCATTTGAAGTTATCAATGTCATTGGAACAGGTGTTAGGAGAGTTGGTTATTGGTCAAATTATTCGGGCTTATCTGTTTTACCTCCAGAAATTCTTTACTCAAATCCTCCTAATCGTTCTGCTTTAAATCAAAATCTATACAACGTGATTTGGCCTGGACAGACGACACAGAGGCCTCGTGGGTGGGCATTTCCATATAATGGCAGACATTTGAGAATTGGAGTGCCAAAACGAGTGAGCTATCTTGAGTTTGTCAGAGAGGTGGATGGTTCAGGCACATTTACTGGGTATTGCATTGATGTCTTCACTGCTGCAGTTAACTTGTTGCCTTATGATGTTCCCTATCAGTTAATTCCTTTTGGTGATGGTCGTACAAATCCGAGCTCTACTGAGCTTGTTCGATTGATCACCACAGGGGATTTTGATGCAGCAGTAGGTGATATTGCTATTATCATGAATCGAACAAGGATGGTTGATTTCACTCAGCCATATATTGAGTCCGGGTTAGTAGTCATTGCTCGGCTGAGGGAGTCAAATTCTAATGCTTGGGCTTTTCTAAGGCCATTCACTCTAAGTATGTGGCTTGTTACGGCTGTCTTTTTCCTCATCGTTGGAACAGTTGTTTGGATTTTGGAACATAGGAGGAACGATGAATTCCGAGGTCCGCCCAGAAAACAACTCATTACAGTTCTATGCTTACTAGATTATCAATTTTCTCTTTTGGTTGCAGGAGAAAACACTGTCAGCACCCTCGGTCGCATAGTGCTTCTCATATGGTTATTTGTGGTTCTGATAATAAACTCAAGTTACACGGCAAATTTGACTTCGATCCTCACAGTACAACAGCTTTCTTCTCCCATCAAAGGAATTGAAACTTTGTTAGCAAGCAATGACCGAATTGGTTACCAGCAGGGCTCATATGCACGAAATTACCTTATTGAAGAACTCAGTATTCACGAGTCCAGGTTAATTCCTCTAATTTCTGCAGCAGATTATACGAAAGCCCTGAATGACGGGCCACAGAATGGTGGTGTTGCTGCCATTGTTGATGAGCGTGCATATATAGAGCTCTTCCTTTCAACGCGGTGCGAATTCAGTATTGTCGGTCAAGAGTTCACCAAAAATGGGTGGGGATTTGCCTTTCCACGAGACTCGCCTTTGGCGATCGACATGTCAACTGCCATTTTGAAACTATCGGAAAATGGCGATCTCCAAAAGATCCATGATAAATGGCTTACAAGAAGTGCTTGCACCTCACAAACTGCAAATCAAGAGGTGGAAAGGCTTCAGCTTAAGAGCTTTTGGGGGCTCTTTCTCTTGTGTGGATTAGCCTGTTTGCTTTCTCTTTGTGTTTATTTCTGTCTCATGGTACGGCAGTACGGAAAGCATTACTCCGACGAACAAGAGTCTACAGGACAAGCCTCTCGTTCAGGCCATCTTCAGACATTTCTATCGTTCGCGGATGAAAAGGAAGAAGTGGTCAAAAGCAGATCCAAAAGACGGCAAATGGAAAGGGCATCCAATCGCGGAAATACCGAAGTAAATACATCAACAAGTCTCAGCATAGGCTCAACTGGTTCAACTTCTAATGGTTCATGA 2793 42.64 MSVVYTLLLLVIWIGISSSGVSTNVSSRPDVVNIGSLFSVSSMIGRVAKIAVEAAVEDVNGDPAVLGGTKLKLTMLDSNYSGFLGIVESLMFMERDTMAIIGPQNSVTAHIISHIANELQIPLLSFSATDPTLCSLEFPFFIRTSQNDLFQMAAIAEIVHYYEWKEVIAIFVDDDHGRNGITALGDELAEKRCKISYKVPLRPDASQDEVTDALVKVVLTESRILVVHTYETTGLVVLRVAKRLGMMGSGYVWITANWLSSLLDTNSPLPDEAMEDIQGVLTLRIYIPDSEPRRKFVSRWSNLTKGKADNGPTGLSTYAFYAYDTVWVLARAIDTFFNQGGNLSFSNYSKLSGTDNLHLNSMSVFNGGKLLLQRILEVNMTGITGPFRFTAERDLIQPAFEVINVIGTGVRRVGYWSNYSGLSVLPPEILYSNPPNRSALNQNLYNVIWPGQTTQRPRGWAFPYNGRHLRIGVPKRVSYLEFVREVDGSGTFTGYCIDVFTAAVNLLPYDVPYQLIPFGDGRTNPSSTELVRLITTGDFDAAVGDIAIIMNRTRMVDFTQPYIESGLVVIARLRESNSNAWAFLRPFTLSMWLVTAVFFLIVGTVVWILEHRRNDEFRGPPRKQLITVLCLLDYQFSLLVAGENTVSTLGRIVLLIWLFVVLIINSSYTANLTSILTVQQLSSPIKGIETLLASNDRIGYQQGSYARNYLIEELSIHESRLIPLISAADYTKALNDGPQNGGVAAIVDERAYIELFLSTRCEFSIVGQEFTKNGWGFAFPRDSPLAIDMSTAILKLSENGDLQKIHDKWLTRSACTSQTANQEVERLQLKSFWGLFLLCGLACLLSLCVYFCLMVRQYGKHYSDEQESTGQASRSGHLQTFLSFADEKEEVVKSRSKRRQMERASNRGNTEVNTSTSLSIGSTGSTSNGS 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3173812 3177739 + Bpe019616.1 Bpe06g00162 105100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00162 930 Gene3D - 737 817 - -
Bpe06g00162 930 CDD GluR_Plant 469 810 - -
Bpe06g00162 930 Gene3D - 580 715 - -
Bpe06g00162 930 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 916 - -
Bpe06g00162 930 MobiDBLite consensus disorder prediction 893 930 - -
Bpe06g00162 930 CDD PBP1_GABAb_receptor_plant 33 424 IPR044440 -
Bpe06g00162 930 Pfam Ligand-gated ion channel 812 843 IPR001320 GO:0015276|GO:0016020
Bpe06g00162 930 Pfam Receptor family ligand binding region 50 407 IPR001828 -
Bpe06g00162 930 Gene3D - 50 397 - -
Bpe06g00162 930 SUPERFAMILY Periplasmic binding protein-like II 446 812 - -
Bpe06g00162 930 PIRSF IGluLR_plant 1 929 IPR017103 -
Bpe06g00162 930 SUPERFAMILY Periplasmic binding protein-like I 27 461 IPR028082 -
Bpe06g00162 930 Gene3D - 147 422 - -
Bpe06g00162 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Bpe06g00162 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Bpe06g00162 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Bpe06g00162 930 Pfam Bacterial extracellular solute-binding proteins, family 3 487 811 IPR001638 -
Bpe06g00162 930 SMART GluR_14 468 812 IPR001320 GO:0015276|GO:0016020
Bpe06g00162 930 MobiDBLite consensus disorder prediction 906 930 - -
Bpe06g00162 930 Gene3D - 461 579 - -
Bpe06g00162 930 PANTHER GLUTAMATE RECEPTOR 3.6 12 916 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00302 Bpe-Chr2:1988917 Bpe06g00162 Bpe-Chr6:3173812 0 dispersed
Bpe06g00162 Bpe-Chr6:3173812 Bpe12g00152 Bpe-Chr12:1122423 0 dispersed
Bpe06g00162 Bpe-Chr6:3173812 Bpe14g00707 Bpe-Chr14:5512767 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00162 K05387 - csv:101213408 1328.54