Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00197 ATGGAGGGTGGAGATGAAGAGAGGGAAGCTCTGAGAAAAAGAGAAATGGAAAATGAAAGAGTTTACAGAGGGATAAGGATGAGGAAATGGGGTAAGTGGGTGGCTGAGATACGAGAACCCAATAAGCGCTCAAGGATTTGGCTTGGTTCTTACTCTTCTCCGGTCGCCGCCGCTCGCGCTTACGACACCGCCGTCTTCCATCTCCGCGGTCCCTCTGCTCGCCTGAACTTTCCTGAGTTTTTATCTCATACACCTGGAGTTCTCTCCCCCGGCGATATCTCTGCAGCGTACATACGGAAGATAGCGACGGAGGTCGGCACGCGAGTCGACGCCTTTGAAAGCTCCCTCCGTCGCCCTACCCAGAGTCCGACAACGGCGGAGATCGAGCACAACTCCAGAGACGGTTACTTACAAGTTGACTTGAACAAAGTACCAGACCCGGAAGATTTGGAGTATGAGTGA 462 52.81 MEGGDEEREALRKREMENERVYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSARLNFPEFLSHTPGVLSPGDISAAYIRKIATEVGTRVDAFESSLRRPTQSPTTAEIEHNSRDGYLQVDLNKVPDPEDLEYE 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6660948 6661409 + Bpe019667.1 Bpe06g00197 105135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00197 153 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
Bpe06g00197 153 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Bpe06g00197 153 MobiDBLite consensus disorder prediction 114 131 - -
Bpe06g00197 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 1 149 - -
Bpe06g00197 153 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Bpe06g00197 153 MobiDBLite consensus disorder prediction 113 153 - -
Bpe06g00197 153 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Bpe06g00197 153 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Bpe06g00197 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 1 149 - -
Bpe06g00197 153 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Bpe06g00197 153 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Bpe06g00197 153 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00197 Bpe-Chr6:6660948 Bpe15g00328 Bpe-Chr15:14794749 1.19E-58 dispersed
Bpe06g00197 Bpe-Chr6:6660948 Bpe13g00099 Bpe-Chr13:6315264 7.76E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21541 PF00847 AP2 5.60E-11 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00197 K09286 - qsu:111995794 185.652