Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00240 TGCTGTGGATGCGAACAAGAAGTTTCAATGGCAGAAGTTAGAGTGGAAAACTTGCTAATAAATGTGGAAGGGCTACAAAAAATTGAAAAAAAAGGTCCAATGGAAGATACAAGTGATGATTTGCGTGTTTCAGAAGAACATTGGAGTGATGATACGTATTCTGATTACGAGGGCCAAAAACTATCTTGTGGTTCCTTGGAAATGGAGTGTGACGATGTAAATGCCCCGAATTTTTGTACTGAATCCCGTCTAGCACCTGAGACCTCTCATCTAATGGTGAATTCTATAGAAAGTGAATTGACACTTAACAATAGGGAAGGAGAACCATCTGTTTCGGAGCCTTCATGGCTAGAAGGTGACGAATCTTTGGCTTTGTGGGTAAAGTGGAGAGGGAAATGGCAGGCAGGAGTCAGATGTGCGAGAGCAGACTGGCCGTTAGCAACTTTGAGAGCAAAACCAACTCACGATCGAAAAAATTACTTTGTAATTTTTTTTCCTCATACAAGGAACTATTCTTGGGCAGATACTCTACTTGTCCTGTCTATTAACGAATTCCCAGAGCCTATTATACACAAGACTCATAGAGCTGGTTTGAAAATGGTTAGGGATTTAAACATTGCACGGCGTTTTATAATGAAAAAATTAGCTGTTGCTATACTGAACTTTGTCGACCAACTTCATTCAGAGGCTTTGATAGAAAGTGCTCAAGATGTGATGAGTTGGAAGGACTTTGCCATGGAAGTATCACGCTGTAATGGTTATTGTGATCTTGGTAGAATGCTTCTAAAACTGCAGAGCATGATTCTACCCCGCTTTATTAATTCTGAGTGGTCTAAACATTCATTACTATCTTGGGTACAACGATGCCAAGATGCTCAAACTGCTGAAACTGTTGAAATGCTGAAAGAGGAGTTAGATGATTCAATTTTGTGGACTGAAATCAATGCTCATCGGGATGAATCAATGCATCCCACGTTCTGTTCTGAATGGAAAACCTGGAAGCATGAAGTCATGAAGTGGTTTTCATTATCCGGTTCTTTATCTAGCTGTGAAACTATGCAGCGGCAGACCAATGATACTCCATTATCCACAAGTCAGCAACTTGGCAGGAAAAGGCCTAAGCTTGAAATTCGTCGTGCTGAACCACATTCTTCGCAGCTGGAATCCAAAAATTCAGAACCATCTACTAGTCTTCAAATTGATTCTGGGTTTTTTAACAGCCAGGGCGGTGCAAATGCAGCAGTATTAGCATCAGAGTCATGTAAAGAAGAGGCTTCAAGAGATGTTACCTCAACAGAGTCGCCCAGCAATGTGGCTAATAAATGGGATGAGATTTTTGTTGAAATTGGCAATTCAAAGTCAATCCCGCCCATAGAAGCTGAATCGACACCTATTAAAGCTATAATTGGGGCAAGACCCTTAGATACAGGAAATAGAAACAGACAGTGTATAGCATTTATCGAATCGAAGGGAAGGCAATGTGTTAGGTGGGCAAATGAGGGAGATGTTTACTGCTGTGTGCATCTGTCCACACGTTTTTCTAGTAACTCTGCCAAAAAACAGAATATTTTCTCTGCCGATGCACCAATGTGCCAAGGTACCACAGTTCTTGGTACAAAATGCAAACATCGCTCTCTGTATGGATCCTCATTCTGTAAAAAGCATGGGCCGATGAGTGAAATGAAATCAAACTATAGTTTCACTGAGAATAGGCTTAAGAGAAAGAATATGGACATGATTTCTAACTTAGAATCAACAGATGGAAAAGATCTAGTTCTTGTTGGTGATGTTGAAAGTCCTCTGCAAGTAGATCCTCTCTCTGTTGGTTTTGCTGATAACCTTGAACAACATCCTAGTAATTGCAACATTACCACAGTGGCCTTGCAATGTATTGGCTCTTGCCGGCAAAATGACAACAGTCCATGCCTGGAAAGTCCAAAACGGCATTCACTATACTGTGAAAAGCATCTACCAAGCTGGCTTAAGAGAGCAAGGAATGGTAAGAGTAGAATAGTATCAAAAGAAGTGTTCATGGAGCTTTTGGGAGATTGTCGCACGCAGGAGGTAAAAATTCATCTGCATCAAGTGTGTGAGCTATTTTATAAGCTCTTTAAAAGTATTTTATCCCTAAGAAACCCGGTTCCCAAGGAAGTTCAGTTTCAATGGGCTCTATCTGAAGCCTCAAAAAACTCAGGAGTCAAAGAACTTTTCATAAAATTAGTTCTCCTTGAAAAAAAGAGATTGAAAGAGATATGGGGATTCGGTTGTGAAGAATATGCTCAACTGTTGCCAGCTTCGAAGGAAGAACCAGCTCAAATACCATTGTTAACTTTCGGTTGTAATGACGATGAAACCTCAATTAGGTGCAAAATTTGCTCTGAAGTGTTTCCAGATGACCAAGCACTCAGCACCCACTTCATGGATAGTCATAAAAAGGAAGCACAATGGCTGTTTAGAGGTTATGCTTGTGCTATCTGCCTAGATTCTTTTACGAACAAAAAAGTCCTTGAATCTCATGTTCAAGATAGGCATCATGTGTTGTTCGTTGAGCAGTGCATGCTAATCCAGTGTATTCCTTGTGGCAGCCATTTTGGAAATACTGAGCAATTATGGTTGCATGTACTTGCTGTTCATCCTAGCGACTTCAGGTTGTCAAAATTACAGAAGAATTATGGGTCTGCCGGTGAGGATTCTCCTCAGAAACAAGAGCTTAATTCAGTTTCTTTAGAGAAATGCTCAGAGAATATACATGGGGAGAGGAAGTTTATTTGCAGGTTATGTGGGTTAAAGTTTGATTTATTGCCTGATCTTGGTCGTCACCATCAAGCAGCACATATGGGCGCGAGTCTAGTCAGCACTACCCCCTCAAAGAGAGGGATACATTATTACGCTTATAAAATGAAATCTGGGAGACTTACCCGTCCAAGATTTAAAAAGAGTCTCACAGCCGCCTCATATCGGATCAGAAACAGGGCCAATGCCACTATTAAGAAACGCATGCAAGCATCAAAGTTGCTTCAAAATGGAGACGTCAATGAACAAAAACATGTACCACAGTTAGCAAGTATTGGAAGATTAATAGAACCCCAATGCTCTTCTGTTGCGAAGATATTGTTCTCTGAGATTCAGAAAACCAAACCCCACCCTACCAGCTTTGATATTTTGGAAACTGCTCGATCTGCTTGCTGCAAAATCACCCTCAAAGCATTGCTGGAGAATCAATATGGATTAATGCCAGAAAACTTATATCTAAAGGCAGCGAAACTCTGCAGTGAGAATAATGTCCAAGTTGATTGGCATCTTGAGGGCTTCAGCTGTCCGAAAGGATGTAAACTGTTTAAGGAATGTTACCTCTCTCCATTGACACCTAATCCTAATGGTTTTATTCATCATGGATCTAGAAATTCACCAGCTCCTGCAGATGTTGATTTGGAAGCTGATGAGTGTCATTATGTTATTGATTCCCACCTTTTAAGACATAGTTCCATGCTGAAAGGTACCATTTTGTGTGATGATATAAGCTTTGGGCTGGAATCTGTGCCTGTTGTTTGTGTGGCTGACGAAGGTGTCCTGGATTCTCTTCAAATTTCCACGGGTGGTTCTGAGCACCAAAATGCTAATTCTTCGCCCTGGAAGGGTTTTACGTATGTTGTGAAGCCAATACTTGATAAATCTCTTGTTCTTGATACAGAGAGTTTCCAACTGGGATGTGGCTGCCCAGATTCAGCATGTCGTCCCGAACTGTGCGATCATGTTTACCTTTTTGATAATGATTTTGATGATGCAAGAGACATTTACGGGAAACGCATGTGTGGCCGATTTCCGTATAACGATAAAGGTCGTGTTGTCCTTGAGGAGGGTTACCTTGTATACGAGTGCAATCAAAAGTGCAGTTGTGGCAGAACCTGTCCAAACAGGGTTTTGCAGAATGGCATTCAAGCGAAACTAGAAGGATGGGCAGTCAGGGCGGGTGAAACAATTCTACGTGGCACGTTTGTATGTGAATATATTGGGGAGATTTTGAACGATGACGAAGCAAAAAAGAGATATCAAAGGCATGCTAGGGAAGGATGCCACTATTTCCTTGATGTTGATGCTCATACTAATGACATGAGTAGATTGGTCGAGGGATTGTCGAAATATGTAATTGATGCTACTAAATTTGGAAACGTTGCACGATTCATCAATCACAGCTGCACACCAAATCTTACAAATTATCAAGTTCTTGTCGAAAGCATGGATTATCATCGAGCTCATATCGGTCTTTATGCAAATCGAGATATAGCTATAGGAGAAGAGATAACATTCGACTATCGCTACAAAGTAGTAGATGACGAGGTATATCCGTGCTATTGTGGAGCCTCTTCATGTCGAGGGCGGCTTTACTAA 4389 41.08 CCGCEQEVSMAEVRVENLLINVEGLQKIEKKGPMEDTSDDLRVSEEHWSDDTYSDYEGQKLSCGSLEMECDDVNAPNFCTESRLAPETSHLMVNSIESELTLNNREGEPSVSEPSWLEGDESLALWVKWRGKWQAGVRCARADWPLATLRAKPTHDRKNYFVIFFPHTRNYSWADTLLVLSINEFPEPIIHKTHRAGLKMVRDLNIARRFIMKKLAVAILNFVDQLHSEALIESAQDVMSWKDFAMEVSRCNGYCDLGRMLLKLQSMILPRFINSEWSKHSLLSWVQRCQDAQTAETVEMLKEELDDSILWTEINAHRDESMHPTFCSEWKTWKHEVMKWFSLSGSLSSCETMQRQTNDTPLSTSQQLGRKRPKLEIRRAEPHSSQLESKNSEPSTSLQIDSGFFNSQGGANAAVLASESCKEEASRDVTSTESPSNVANKWDEIFVEIGNSKSIPPIEAESTPIKAIIGARPLDTGNRNRQCIAFIESKGRQCVRWANEGDVYCCVHLSTRFSSNSAKKQNIFSADAPMCQGTTVLGTKCKHRSLYGSSFCKKHGPMSEMKSNYSFTENRLKRKNMDMISNLESTDGKDLVLVGDVESPLQVDPLSVGFADNLEQHPSNCNITTVALQCIGSCRQNDNSPCLESPKRHSLYCEKHLPSWLKRARNGKSRIVSKEVFMELLGDCRTQEVKIHLHQVCELFYKLFKSILSLRNPVPKEVQFQWALSEASKNSGVKELFIKLVLLEKKRLKEIWGFGCEEYAQLLPASKEEPAQIPLLTFGCNDDETSIRCKICSEVFPDDQALSTHFMDSHKKEAQWLFRGYACAICLDSFTNKKVLESHVQDRHHVLFVEQCMLIQCIPCGSHFGNTEQLWLHVLAVHPSDFRLSKLQKNYGSAGEDSPQKQELNSVSLEKCSENIHGERKFICRLCGLKFDLLPDLGRHHQAAHMGASLVSTTPSKRGIHYYAYKMKSGRLTRPRFKKSLTAASYRIRNRANATIKKRMQASKLLQNGDVNEQKHVPQLASIGRLIEPQCSSVAKILFSEIQKTKPHPTSFDILETARSACCKITLKALLENQYGLMPENLYLKAAKLCSENNVQVDWHLEGFSCPKGCKLFKECYLSPLTPNPNGFIHHGSRNSPAPADVDLEADECHYVIDSHLLRHSSMLKGTILCDDISFGLESVPVVCVADEGVLDSLQISTGGSEHQNANSSPWKGFTYVVKPILDKSLVLDTESFQLGCGCPDSACRPELCDHVYLFDNDFDDARDIYGKRMCGRFPYNDKGRVVLEEGYLVYECNQKCSCGRTCPNRVLQNGIQAKLEGWAVRAGETILRGTFVCEYIGEILNDDEAKKRYQRHAREGCHYFLDVDAHTNDMSRLVEGLSKYVIDATKFGNVARFINHSCTPNLTNYQVLVESMDYHRAHIGLYANRDIAIGEEITFDYRYKVVDDEVYPCYCGASSCRGRLY 1462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12753405 12760589 + Bpe019726.1 Bpe06g00240 105178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00240 1462 SUPERFAMILY SET domain 1159 1452 IPR046341 -
Bpe06g00240 1462 SMART preset_2 1170 1298 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bpe06g00240 1462 MobiDBLite consensus disorder prediction 352 370 - -
Bpe06g00240 1462 ProSitePatterns Zinc finger C2H2 type domain signature. 857 878 IPR013087 -
Bpe06g00240 1462 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 6 1462 - -
Bpe06g00240 1462 SMART c2h2final6 855 878 IPR013087 -
Bpe06g00240 1462 SMART c2h2final6 922 945 IPR013087 -
Bpe06g00240 1462 SMART c2h2final6 787 810 IPR013087 -
Bpe06g00240 1462 SMART c2h2final6 821 844 IPR013087 -
Bpe06g00240 1462 Pfam SET domain 1318 1438 IPR001214 GO:0005515
Bpe06g00240 1462 Gene3D SET domain 1162 1462 IPR046341 -
Bpe06g00240 1462 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 6 1462 - -
Bpe06g00240 1462 ProSitePatterns Zinc finger C2H2 type domain signature. 789 810 IPR013087 -
Bpe06g00240 1462 ProSiteProfiles SET domain profile. 1295 1439 IPR001214 GO:0005515
Bpe06g00240 1462 ProSiteProfiles Zinc finger C2H2 type domain profile. 821 844 IPR013087 -
Bpe06g00240 1462 Pfam Pre-SET motif 1174 1306 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bpe06g00240 1462 SMART set_7 1310 1445 IPR001214 GO:0005515
Bpe06g00240 1462 ProSiteProfiles Post-SET domain profile. 1446 1462 IPR003616 -
Bpe06g00240 1462 Pfam Zinc finger C2H2-type, 3 repeats 823 946 IPR040689 -
Bpe06g00240 1462 ProSitePatterns Zinc finger C2H2 type domain signature. 924 945 IPR013087 -
Bpe06g00240 1462 Gene3D Classic Zinc Finger 781 851 - -
Bpe06g00240 1462 ProSiteProfiles Zinc finger C2H2 type domain profile. 922 950 IPR013087 -
Bpe06g00240 1462 MobiDBLite consensus disorder prediction 371 386 - -
Bpe06g00240 1462 MobiDBLite consensus disorder prediction 352 403 - -
Bpe06g00240 1462 ProSiteProfiles Pre-SET domain profile. 1235 1311 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bpe06g00240 1462 ProSiteProfiles Zinc finger C2H2 type domain profile. 787 815 IPR013087 -
Bpe06g00240 1462 MobiDBLite consensus disorder prediction 387 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00240 - - - qsu:111985175 1915.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00240 Bpe-Chr6:12753405 Bpe07g00196 Bpe-Chr7:1351753 4.81E-33 dispersed
Bpe14g00692 Bpe-Chr14:5433644 Bpe06g00240 Bpe-Chr6:12753405 8.03E-10 dispersed
Bpe14g01288 Bpe-Chr14:9798260 Bpe06g00240 Bpe-Chr6:12753405 1.53E-15 dispersed
Bpe14g01363 Bpe-Chr14:10990544 Bpe06g00240 Bpe-Chr6:12753405 7.44E-17 dispersed
Bpe15g00066 Bpe-Chr15:7813559 Bpe06g00240 Bpe-Chr6:12753405 5.88E-14 dispersed
Bpe06g00240 Bpe-Chr6:12753405 Bpe05g00555 Bpe-Chr5:19692303 2.38E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g897 . . Bda04g00312 . . . Bma09g00337 . . . . Cma07g00742 Car03g00706 Car07g00729 . . . . . . . . . . . . . . . . . . . Cone10ag0558 . Lsi01g01041 . . . . . . . . Bpe06g00240 . . . . Cmo07g00763 . . . . . . . . . . . . . . . . . . . . . . Chy02g00959 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007882 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21547 PF05033 Pre-SET 3.20E-13 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00240 Bpe_Chr06 FPKM 1.613333 1.925336 2.02843 0.832382 7.876863 6.509703 6.338047 0.94357 0.0 0.792477