Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00244 ATGCGGATTAGCTGTTTGATAAGTCATTCAAATATCCGTTTGAATCAGTTTGTTCGCTTTTATGCTCGCGAGCCATTTCCTAGTAAAGTGGCACACTATCTCTACCGTGCAAAATTCATTGATTCCATTCGAATTAGTCTTCGTTCAGATCCATCAACTTCTCTAGCCCCTATCTTAAAAAATCGTCTTCTTGATTCATTTGTTGTTACCAATGCAATTCGGTCGGCTCCCTCTGCAGATTCTGCTCTCTTCATCTGCGAGACTCTTGAAAAAAATCCATATTTTTCGCATAACCAGTCTACTATTAATGCACTGGCTACTGTTCTTGCCAAGAACTGCCGCAGTGCAGAGCTCAAATCCCTTGTTGATGCTGTTAATGCTGGAAAATTCGTAAATGTTTGTTTGAGCTTCATGAATCTCATGCAATGGTTTGGCTGCATTGAAGACCTTGAATCAGTTATTAAAGTATGGGAAGAATACAGGCGGTCAGATAAAGGTTTATGTGCGGAGTCTTATAATGTGGTCATGCAGCTCTATGCACAGCAGAAAATGGATGCAGAGGCATTGGAGGTTTTCCGTAAGTTGATTGATGAAGGGGTAAAACCAAATTGTAGAACTTATACAATAATTATTGAGCACCTTGTAAGTTCAGGGAAAATAAGTGCGGCTTTGCAAGTTTTCAATATGTTGCCACTGATGAGGATCAGGCATACTGGAAAGCAGTACTCTGTTTTGCTAAAAGGTTTGGTTAGCGCTAAAAGATTTGAAGATGTTAAAACGTTACTTAATTGCATGGAGGATGATGGAAAAATGCCTACTCGAAACATGTCATTATCATTGCAGTATATGAAGGATGCTGGATTTGTTGATGAGGTCAGTGGGTTCCTAGGAGAAATGGCTCCAGATGAGAGAATAAAAAATATAGTTTGTGGTACAGAGGATAGTGATGAGGAGGAAGATGATGACGAGGTGGAGGAGAACGTCAACAATGCTAATAGAGATGAGGATGCCAATAGGATTAAGTTAAAACCATGGCTGGATCCTAGAGCATTGGCAAAGGCGTTGAATCCATGGAGTCCTATTGAGGTATCGGCTCTGGAGAATGCGAAAATTGTCTGGACAACCCAATTGGTTTGCAAGATTTTACGAAATTTCAGATCACCCAAACCAGCATGGGAATTCTTCTGCTGGGTTGCTTATCAACCTGGATTCGTTCATGACATCTACACTGTACAGAGAATGATTGTTCATTTGGCCCGCCATGGATGTGTTGAATTGGTTGATAATCTCATATCGAAAGTAAGAAGAGAAAGAATGAGATTACCTTTTTGCACTATCAAGCTGATTATCGACTTTTATGGAATTTCAAAGAATGCTGATGCGGCTCTCAAGGTTTTTCGTGACGACAGAAATCTGTGCGGCCCTATATCAGAATTGAACTTAATGCTGCTTTACTCGTCTTTGTTACGAACATTGACAAAGTGCGGCTTGAATTCTGAAACCTTGAATGTACTCGATGAGATGATTCTCAATGGAATTTCTCCAGATCTCCAGACTTATTCAGGGTTGATGCACTATTTTGCACTGCAGGGAGATATTACTACGGTGCAGAAACTCTTTTCCAGTGTTAGGCAGAGTGGTCTGGAGCCAGATGCTCATATGTTTAAAGTATTGATTGGAGCTTATTGCAGAAGTGAGAGAGCATCTCTTGCATGGAGGGTGTTTGAAGACATGAGAAATTATAATGTTATGCCTGATACCTGCACAAAAGATTTGCTCGTAAACAGTCTCTGGAAAGAAGGCAAGCGAAGGGAGGCTGCAGCTGTTCTTGAGGCCTGTGAGGAAGTATGTGAATGTCCACGGGCTTTGCCGGGTGATTTATGGACGGTTAGCTCATCTGATCTCACAGAAGTGTATGACACTTACTCAAGCAGCTTTAAGGCAAATGGTGGCTAG 1956 41.21 MRISCLISHSNIRLNQFVRFYAREPFPSKVAHYLYRAKFIDSIRISLRSDPSTSLAPILKNRLLDSFVVTNAIRSAPSADSALFICETLEKNPYFSHNQSTINALATVLAKNCRSAELKSLVDAVNAGKFVNVCLSFMNLMQWFGCIEDLESVIKVWEEYRRSDKGLCAESYNVVMQLYAQQKMDAEALEVFRKLIDEGVKPNCRTYTIIIEHLVSSGKISAALQVFNMLPLMRIRHTGKQYSVLLKGLVSAKRFEDVKTLLNCMEDDGKMPTRNMSLSLQYMKDAGFVDEVSGFLGEMAPDERIKNIVCGTEDSDEEEDDDEVEENVNNANRDEDANRIKLKPWLDPRALAKALNPWSPIEVSALENAKIVWTTQLVCKILRNFRSPKPAWEFFCWVAYQPGFVHDIYTVQRMIVHLARHGCVELVDNLISKVRRERMRLPFCTIKLIIDFYGISKNADAALKVFRDDRNLCGPISELNLMLLYSSLLRTLTKCGLNSETLNVLDEMILNGISPDLQTYSGLMHYFALQGDITTVQKLFSSVRQSGLEPDAHMFKVLIGAYCRSERASLAWRVFEDMRNYNVMPDTCTKDLLVNSLWKEGKRREAAAVLEACEEVCECPRALPGDLWTVSSSDLTEVYDTYSSSFKANGG 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12860806 12862761 + Bpe019732.1 Bpe06g00244 105182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00244 651 Gene3D Tetratricopeptide repeat domain 363 473 IPR011990 GO:0005515
Bpe06g00244 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Bpe06g00244 651 Pfam PPR repeat 242 269 IPR002885 -
Bpe06g00244 651 Pfam PPR repeat 485 513 IPR002885 -
Bpe06g00244 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
Bpe06g00244 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Bpe06g00244 651 Gene3D Tetratricopeptide repeat domain 478 637 IPR011990 GO:0005515
Bpe06g00244 651 TIGRFAM PPR: pentatricopeptide repeat domain 554 587 IPR002885 -
Bpe06g00244 651 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Bpe06g00244 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Bpe06g00244 651 PANTHER OS01G0167750 PROTEIN 14 648 IPR044175 -
Bpe06g00244 651 Gene3D Tetratricopeptide repeat domain 71 343 IPR011990 GO:0005515
Bpe06g00244 651 Pfam PPR repeat family 171 214 IPR002885 -
Bpe06g00244 651 Pfam PPR repeat family 550 597 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00244 - - - qsu:112032931 806.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00244 Bpe-Chr6:12860806 Bpe04g00088 Bpe-Chr4:650036 1.38E-09 dispersed
Bpe06g00244 Bpe-Chr6:12860806 Bpe12g00560 Bpe-Chr12:11456101 1.59E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g903 . . Bda04g00316 . . . Bma09g00349 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1354 . . . . . . . . . . Bpe06g00244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017282 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00244 Bpe_Chr06 FPKM 7.259238 8.105467 26.570648 26.046965 10.011336 8.608006 10.222998 0.615076 0.329901 0.257686