Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00249 ATGAACTCTGTGAATTCAAGCACATGGATTCAATCATGCTCCGTTTTAAATGGACCCGGTAGATCCAGATCCAGATCCAAATCCAAATCCCCCAATTCCCATTTCAATCCTTCGCTCAGAAAGATGCCCATTTCCTTCTCTCGTTCTAATGGCGGATTATCGGGGTCTCCGCCGTTTTCGTCCTTCCCCGTCACTGCGGTGCTCACTAAGGAAGAAACCCTAAAAGAAGAGGAGGAGGAAGAGAAACCCTTGTTCGATTTCAAGGGCTACATGATTCAGAAAGCTAATTCGGTGAATAAGGCGTTGGATGATGTAGTTTCTCTCCGAGAACCACTCAAAATCCATGAAGCTATGCGCTATTCTCTCTTGGCCGGCGGCAAGCGGGTCCGCCCAGTGCTCTGCATCGCCGCAGGCGAGCTCGTCGGTGGCCTTGAATCCATGGCTATGCCGGCGGCCTGCGCGGTGGAGATGATTCACACCATGTCTCTGATCCACGACGACCTCCCTTGTATGGACAACGACGATCTACGACGAGGAAAGCCCACCAACCACAAAGTCTTCGGGGAGGACGTGGCCGTCTTGGCCGGAGACGCCCTTTTGGCGTTTGCTTTCGAACACATCGCCGTATCTACTGTTGGAGTAACTCCGGCCAGGATAGTGTGCGCGATTGGAGAGCTAGCAAAGTCGATTGGGACAGAGGGATTAGTTGCTGGACAAGTGGTTGATATTTGCTCGGAGGGACTAGCCGGAGTTGAGTTGGAGCAGCTCGAGTTCATCCATGTCCACAAGACGGCCGCCCTACTGGAAGGGTCGGTGGTGCTAGGAGCAATCATGGGAGGCGGATCCAGCGAGGAGGTAGAGAAATTGAGGACCTTTGCTAGGTACATTGGGCTGCTCTTTCAGGTGGTGGACGACATTCTGGACGTAACAAAGTCATCACACGATCTCGGAAAGACGGCCGGAAAAGACCTCGCTTCCGACAAAGTTACCTACCCAAAGCTCTTAGGCATTGAAAAATCAAGGGAGTTTGCTGAGAAATTGAACAGAGATGCAAAGGAGCAGCTTTCTGGGTTTGATCCTCGTAAGGTCGCACCATTGATTGCTTTGACTAATTATATTTCTTACAGGCAAAACTAG 1137 51.19 MNSVNSSTWIQSCSVLNGPGRSRSRSKSKSPNSHFNPSLRKMPISFSRSNGGLSGSPPFSSFPVTAVLTKEETLKEEEEEEKPLFDFKGYMIQKANSVNKALDDVVSLREPLKIHEAMRYSLLAGGKRVRPVLCIAAGELVGGLESMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIAVSTVGVTPARIVCAIGELAKSIGTEGLVAGQVVDICSEGLAGVELEQLEFIHVHKTAALLEGSVVLGAIMGGGSSEEVEKLRTFARYIGLLFQVVDDILDVTKSSHDLGKTAGKDLASDKVTYPKLLGIEKSREFAEKLNRDAKEQLSGFDPRKVAPLIALTNYISYRQN 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12956622 12957758 - Bpe019739.1 Bpe06g00249 105187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00249 378 ProSitePatterns Polyprenyl synthases signature 2. 296 308 IPR033749 -
Bpe06g00249 378 Gene3D Farnesyl Diphosphate Synthase 79 378 IPR008949 -
Bpe06g00249 378 SFLD Polyprenyl Transferase Like 91 376 - -
Bpe06g00249 378 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC-LIKE 1 378 - -
Bpe06g00249 378 ProSitePatterns Polyprenyl synthases signature 1. 163 179 IPR033749 -
Bpe06g00249 378 MobiDBLite consensus disorder prediction 1 54 - -
Bpe06g00249 378 SFLD Isoprenoid Synthase Type I 91 376 - -
Bpe06g00249 378 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 1 378 - -
Bpe06g00249 378 CDD Trans_IPPS_HT 114 376 IPR000092 GO:0008299
Bpe06g00249 378 SUPERFAMILY Terpenoid synthases 88 359 IPR008949 -
Bpe06g00249 378 Pfam Polyprenyl synthetase 114 347 IPR000092 GO:0008299
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00249 K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] - zju:107424859 535.798
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01374 Bpe-Chr2:17339715 Bpe06g00249 Bpe-Chr6:12956622 9.08E-132 dispersed
Bpe03g00866 Bpe-Chr3:28427375 Bpe06g00249 Bpe-Chr6:12956622 2.24E-27 dispersed
Bpe06g00249 Bpe-Chr6:12956622 Bpe15g00796 Bpe-Chr15:18184790 7.10E-73 dispersed
Bpe06g00249 Bpe-Chr6:12956622 Bpe09g00274 Bpe-Chr9:2034941 7.54E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g916 . . . . . . Bma09g00356 . . . . Cma07g00754 . Car07g00741 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe06g00249 . . . . Cmo07g00777 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002369 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00249 Bpe_Chr06 FPKM 9.103319 12.793373 5.510669 6.362942 3.260779 3.172379 4.06665 0.0 0.092292 0.0