Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00273 ATGCGTAGTTCTGATGAAGAAGAAGTTTTCTTCGACTCGACAGATTGTCTGCCAATGGAGGATTGTTTTGGAGGAAAAGAAGAGATGGGATATGAAATATGGATGAAAGAGCCACAGAGCGTAGACAAAAGGCGTGAGCGTTTTCTGCTAGGAATGGGATTATCAGAATTTGCTTCTCCTAAGCTTTGTACTGAGGATGTTGCTATGGTGGTTAATTCTTCTTCAAATACAACGGGATTGGAGAGGCTGACCGAGCAAAGTGGAGCAGTTTTGAGCTCTTGCTATTTGCCAACTTCTACCCATAAAAAAGTAGAAGAGCAAAATAAAGATGAAACCGAGCTTTCGTCTTCTTCCCCACAGTTTGTACATAGCCAAGCAGAGGCAGGAGGAGAGGAAAATCAGAGTTTTGATGTAAAGGAAATGAAAATAAAGAGCTGGTGGAAGTTTCTTATGAGCAAAAGTGGATCTAAAAAACCTTTTGATGAGGAATTCAACCCGAGATTGAGGATGAAGGTGAAGCAAAACAAAAAGAATTGCATGGAATTCTCAGCGCTTTATCATAGACAGATCTTTCATGCACACAAGGGATCAATTTGGACGATGGCATTCAGTCTTGACGGTCAGTTTCTTGCGAGTGGAGGCGAAGATGGAATTGTGCGTGTTTGGCGGGTAACCTACGACGATGCTTTGGGTAATTTTTTGACACCTGAAGGCAATTTGGGTAGAAACATGGCCAGAAAAAAGAAAAAGTTTTGCAGCAAAGAAACAGGCAACACTACTGTAGTGGTTCCGGACAAACTTTTTCGGATAGAAGAGTCATCTGTCCAAGAGTTTAATGGTCACTCTGGCGATGTCTTAGACTTGGCTTGGACCAATTCCAATTGTCTTCTTTCATCTTCGGTGGATAAAACTGTTCGATTCTGGAAAGTGGGTTCGGATTGCTGTTTAAATGTTTTTCATCACAAAAACTATGTTACTTGCATCCAACTCAATCCTGCTGATGAAAACTATTTTATATCTGGATCTGTCGATGGAAAAGTCCGGATTTGGGGTGTAAAGGAAAAGCGGGTGGTCGACTGGGTCGATACACGAGATGTAATTACTTCTATATCGTACCAACCAGATGCAAAGGGATTTATCGTCGGTTCTGTTACTGGATCTTGCCGCTTCTACTCACTTGCAGATGATTATCTGCAACTGTATGGAAAGATAAATATTCAAGGAAAAAAGAAGGGGTTGGGCAAAAGCATCACTGGAATAAAGTTTTCTCGTGACAATTATCAAAGAGTTATGGTAACATCAGAAGACTCTAAAGTCTATATTTTCGAGGGGCTTGACATCATTCACAAATATAAAGGTCTTCCAAACTCGGGAAGTCAAATGTCGGGTTCATTTACTCGGAGCGAGAAACATATCATCTCTGTCGGACACGACTCTCGTGTTTACATTTGGAATCACGATAAACTCATTTTCCCAAAATGGACGATGAAACGGAAAAAATCCAACACATCGTGTGAGCATTTCTTCTCAGAAGGTGTTTCGGTCGCGATTCCGTGGAAAGGCAATCAAAGTGATGATGGAAGTTTTCATAGTTTTAAGGATGACCCTAATTCCTCTTTCTTGAGTAGAGATTCGAAGCATTTTTCATTGAGTAATTGGTTATTTGCGGACGGCACCTGCAAAGACTCTAAAACATGGCCAGAAGAACTTCTTCCTCGATTGAATTCTCTTGCCGAGGAAGATGACATCTCTGACCTACTCCACAGCCATGCCATCAACTCAATCGACCCATTTGTTAAGTCAGAAACGTGGGGGCTTGTTATTGTCGGTGCTGGATTGGATGGAACGATTAGGACATTTCACAATTATGGATTGCCTGTGGAGCTTTAG 1890 41.48 MRSSDEEEVFFDSTDCLPMEDCFGGKEEMGYEIWMKEPQSVDKRRERFLLGMGLSEFASPKLCTEDVAMVVNSSSNTTGLERLTEQSGAVLSSCYLPTSTHKKVEEQNKDETELSSSSPQFVHSQAEAGGEENQSFDVKEMKIKSWWKFLMSKSGSKKPFDEEFNPRLRMKVKQNKKNCMEFSALYHRQIFHAHKGSIWTMAFSLDGQFLASGGEDGIVRVWRVTYDDALGNFLTPEGNLGRNMARKKKKFCSKETGNTTVVVPDKLFRIEESSVQEFNGHSGDVLDLAWTNSNCLLSSSVDKTVRFWKVGSDCCLNVFHHKNYVTCIQLNPADENYFISGSVDGKVRIWGVKEKRVVDWVDTRDVITSISYQPDAKGFIVGSVTGSCRFYSLADDYLQLYGKINIQGKKKGLGKSITGIKFSRDNYQRVMVTSEDSKVYIFEGLDIIHKYKGLPNSGSQMSGSFTRSEKHIISVGHDSRVYIWNHDKLIFPKWTMKRKKSNTSCEHFFSEGVSVAIPWKGNQSDDGSFHSFKDDPNSSFLSRDSKHFSLSNWLFADGTCKDSKTWPEELLPRLNSLAEEDDISDLLHSHAINSIDPFVKSETWGLVIVGAGLDGTIRTFHNYGLPVEL 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13662358 13665370 - Bpe019768.1 Bpe06g00273 105211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00273 629 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 310 IPR001680 GO:0005515
Bpe06g00273 629 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 232 IPR001680 GO:0005515
Bpe06g00273 629 SUPERFAMILY WD40 repeat-like 185 618 IPR036322 GO:0005515
Bpe06g00273 629 Gene3D - 174 517 IPR015943 GO:0005515
Bpe06g00273 629 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 278 310 - -
Bpe06g00273 629 PRINTS G protein beta WD-40 repeat signature 296 310 IPR020472 -
Bpe06g00273 629 PRINTS G protein beta WD-40 repeat signature 210 224 IPR020472 -
Bpe06g00273 629 PRINTS G protein beta WD-40 repeat signature 338 352 IPR020472 -
Bpe06g00273 629 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 360 IPR001680 GO:0005515
Bpe06g00273 629 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 353 - -
Bpe06g00273 629 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 191 224 - -
Bpe06g00273 629 SMART WD40_4 271 309 IPR001680 GO:0005515
Bpe06g00273 629 SMART WD40_4 353 392 IPR001680 GO:0005515
Bpe06g00273 629 SMART WD40_4 312 351 IPR001680 GO:0005515
Bpe06g00273 629 SMART WD40_4 403 443 IPR001680 GO:0005515
Bpe06g00273 629 SMART WD40_4 444 485 IPR001680 GO:0005515
Bpe06g00273 629 SMART WD40_4 184 223 IPR001680 GO:0005515
Bpe06g00273 629 PANTHER WD REPEAT DOMAIN 44 5 629 IPR040324 -
Bpe06g00273 629 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 629 - -
Bpe06g00273 629 Pfam WD domain, G-beta repeat 274 309 IPR001680 GO:0005515
Bpe06g00273 629 Pfam WD domain, G-beta repeat 189 222 IPR001680 GO:0005515
Bpe06g00273 629 Pfam WD domain, G-beta repeat 315 350 IPR001680 GO:0005515
Bpe06g00273 629 MobiDBLite consensus disorder prediction 113 131 - -
Bpe06g00273 629 MobiDBLite consensus disorder prediction 101 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00273 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101207772 675.241
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe06g00273 Bpe15g00398 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00273 Bpe-Chr6:13662358 Bpe13g00025 Bpe-Chr13:551870 0 dispersed
Bpe02g00848 Bpe-Chr2:6288455 Bpe06g00273 Bpe-Chr6:13662358 2.75E-92 transposed
Bpe03g00197 Bpe-Chr3:2329303 Bpe06g00273 Bpe-Chr6:13662358 5.59E-125 transposed
Bpe07g01024 Bpe-Chr7:15814925 Bpe06g00273 Bpe-Chr6:13662358 2.00E-121 transposed
Bpe10g00239 Bpe-Chr10:8819226 Bpe06g00273 Bpe-Chr6:13662358 0 wgd
Bpe15g00398 Bpe-Chr15:15503646 Bpe06g00273 Bpe-Chr6:13662358 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00273 Bpe_Chr06 FPKM 3.062814 3.222584 0.135354 0.036108 0.361643 0.511464 0.378997 1.686734 1.753012 1.845697