Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00274 ATGAAGTCTCCTGTTAGTCTCTGCACCGGAGCTACCTACGATCGCTCCAGCATCCAGCAATGGCTCGAAAAAGGAAACAATACCTGTCCATTGACTATGCAGGTGCTTCAGAACAAGGAGTTCGTCCCTAACCGCAATCTACAGCGCCTCATTAAGGTATGGTCTGATTCGGTTGATTCCCAAGCTGACTTCGCTGAGTCGACTTTCTTGAACTCCGATGCTTTGGAAGAACAAGCGACGGAGCTCATTGAGCATCTTGCTACGGACAAAAGGGAGAGCAGCTGCTCTGAGTCTTTATCCAAGCTGATTTGTTTTGCTAGGGAATCCGAGGGGAACCGGAAAATTCTTGGGAAAATGGACCAGCTCGTTCCGATTCTTGTTGAGTTTCTCGGCAATGTTAGTGGCAGAGCTTGTGGGAATATTAATTTGATCGAACAAGTAGTTACAGTTTTAGGTTTAATCCGCAACGAAATAGAAGATAAGGAGACATTGATGAACTCCATGTTGAAAGATGATCGCGATTGCTTGTCGTCGTTGCTTTTCGTTCTGAAGCAAGGAAGCGTCGATTCACAAATTGGATCTGTCAGTATTTTGGAATCAATCGCCATCAATTCCAAAGCGAAGCTCAAAATCGCCGAAAAAGAGGGATTACTTGCCGAAATAATAAAATCAATTGGTAAAGAAAAGGATCCGTGCCAAACTGAATCTGTTTTATCCTGCCTAATTTCAATCTCGATGCCGAAATGCGTCAAAATCAAGTCAGTTCACCTCGGAGTAATCAAATCGCTGACAAAGCTTCTTTCAGAGCCAAACTCAACCGCAAGCGTCTCCACAACCCAAAAGGCCCTGAAATTGCTCGAAATGGCTTCATCGGTTAAAGACGGGAGGTTGGAGATTTGCGCTAACTCAGATTGCGTAGCGGCGATCGTACAGAAGTTGCTGAAGGTGTCGAATCCAGCGACAGAGCACGCTGTTACAATCTTGTGGAGCGTTTGTTATCTTTTCCGCGATCCGGCGGCGCAAGAGGCGGTTACGAAGGCCAACGGATTGACGAAAATCCTGCTGTTGATACAGAGCAACTGCTCGCCGCAGATCCGGCAAATGGCGATGGATTTGCTGAAAATTTTCAGAATCAATTCGAAATCGTGTTTATCGAGCTACGATACTAAGACTACTCACATCATGCCATGTTAG 1194 45.64 MKSPVSLCTGATYDRSSIQQWLEKGNNTCPLTMQVLQNKEFVPNRNLQRLIKVWSDSVDSQADFAESTFLNSDALEEQATELIEHLATDKRESSCSESLSKLICFARESEGNRKILGKMDQLVPILVEFLGNVSGRACGNINLIEQVVTVLGLIRNEIEDKETLMNSMLKDDRDCLSSLLFVLKQGSVDSQIGSVSILESIAINSKAKLKIAEKEGLLAEIIKSIGKEKDPCQTESVLSCLISISMPKCVKIKSVHLGVIKSLTKLLSEPNSTASVSTTQKALKLLEMASSVKDGRLEICANSDCVAAIVQKLLKVSNPATEHAVTILWSVCYLFRDPAAQEAVTKANGLTKILLLIQSNCSPQIRQMAMDLLKIFRINSKSCLSSYDTKTTHIMPC 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13678948 13680141 - Bpe019769.2 Bpe06g00274 105212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00274 397 SUPERFAMILY RING/U-box 1 56 - -
Bpe06g00274 397 Pfam U-box domain 1 55 IPR003613 GO:0004842|GO:0016567
Bpe06g00274 397 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Bpe06g00274 397 PANTHER WDSAM1 PROTEIN 1 397 IPR045185 GO:0061630
Bpe06g00274 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 59 IPR013083 -
Bpe06g00274 397 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 1 397 - -
Bpe06g00274 397 Gene3D - 60 230 IPR011989 -
Bpe06g00274 397 SUPERFAMILY ARM repeat 149 383 IPR016024 -
Bpe06g00274 397 Gene3D - 231 376 IPR011989 -
Bpe06g00274 397 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00274 Bpe-Chr6:13678948 Bpe12g00641 Bpe-Chr12:12046552 5.66E-29 dispersed
Bpe06g00274 Bpe-Chr6:13678948 Bpe15g00290 Bpe-Chr15:14388881 9.89E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00274 - - cmax:111478747 471.085