Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00278 ATGGCAGATGGTGAGGATATTCAGCCACTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCAAGAGCTGTTTTTCCCAGTATTGTGGGGCGACCTAGACACACTGGTGTTATGGTTGGTATGGGCCAGAAAGATGCTTATGTTGGCGATGAAGCTCAGTCCAAAAGAGGTATTCTTACCTTGAAATATCCTATCGAGCATGGAATAGTCAGCAATTGGGATGACATGGAAAAGATTTGGCATCACACTTTTTACAATGAGCTTCGGGTTGCTCCTGAAGAGCACCCAGTACTGCTCACAGAGGCTCCCCTTAATCCGAAGGCTAATAGAGAAAAGATGACTCAGATCATGTTTGAAACATTTAATGTCCCTGCCATGTATGTTGCCATTCAAGCTGTTTTATCTCTGTATGCAAGTGGTCGTACAACTGGAATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTTCCCATTTACGAGGGTTATGCTCTCCCTCATGCCATTCTTCGTCTAGACCTTGCTGGTCGAGATCTTACAGATGCTTTGATGAAGATTCTAACAGAAAGAGGTTATATGTTCACCACAACTGCTGAACGGGAAATTGTCCGGGATATGAAAGAAAAGCTTGCCTATGTTGCTCTTGATTATGAACAGGAGCTGGAAACTTCTAAGAGTAGTTCCTCTGTTGAGAAGAACTATGAATTACCTGATGGTCAAGTTATTACAATTGGAGCAGAGAGATTCCGATGCCCTGAAGTCCTCTTCCAGCCATCACTCATTGGAATGGAAGCTGCTGGAATTCATGAGACTACTTACAACTCTATTATGAAGTGTGATGTGGATATCAGAAAAGATCTGTATGGAAACATTGTCCTTAGTGGTGGTTCAACTATGTTCCCTGGTATTGCTGATAGAATGAGCAAGGAAATCACAGCCCTTGCTCCTAGCAGCATGAAGATTAAGGTCGTTGCACCACCAGAAAGAAAATACAGTGTGTGGATTGGAGGTTCAATCCTTGCATCGCTCAGCACATTCCAGCAGATGTGGATCTCGAAGGGTGAGTATGATGAGTCTGGCCCATCTATTGTCCACAGAAAATGCTTCTGA 1134 43.92 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETSKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13735910 13737310 + Bpe019773.1 Bpe06g00278 105216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00278 377 Pfam Actin 5 377 IPR004000 -
Bpe06g00278 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Bpe06g00278 377 Gene3D - 140 340 - -
Bpe06g00278 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Bpe06g00278 377 Gene3D - 10 371 - -
Bpe06g00278 377 PANTHER ACTIN 1 376 IPR004000 -
Bpe06g00278 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Bpe06g00278 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Bpe06g00278 377 PRINTS Actin signature 238 254 IPR004000 -
Bpe06g00278 377 PRINTS Actin signature 51 62 IPR004000 -
Bpe06g00278 377 PRINTS Actin signature 63 85 IPR004000 -
Bpe06g00278 377 PRINTS Actin signature 142 161 IPR004000 -
Bpe06g00278 377 PRINTS Actin signature 28 37 IPR004000 -
Bpe06g00278 377 PRINTS Actin signature 117 130 IPR004000 -
Bpe06g00278 377 PANTHER ACTIN 1 376 - -
Bpe06g00278 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Bpe06g00278 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Bpe06g00278 377 SMART actin_3 7 377 IPR004000 -
Bpe06g00278 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00278 K10355 ACTF; actin, other eukaryote - dcr:108214750 755.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00737 Bpe-Chr3:27480402 Bpe06g00278 Bpe-Chr6:13735910 2.51E-40 dispersed
Bpe04g01709 Bpe-Chr4:22952678 Bpe06g00278 Bpe-Chr6:13735910 0 dispersed
Bpe06g00278 Bpe-Chr6:13735910 Bpe15g01288 Bpe-Chr15:21213105 0 dispersed
Bpe06g00278 Bpe-Chr6:13735910 Bpe04g01456 Bpe-Chr4:21189952 0 transposed
Bpe06g00278 Bpe-Chr6:13735910 Bpe08g00106 Bpe-Chr8:572280 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1241 . . . . . . . . Cmo02g00620 Cmo20g01080 Cma03g01077 Cma07g00783 Car03g00968 Car07g00770 Sed01g0035 Cpe19g00544 Cpe10g00351 Bhi03g01386 Tan03g1337 Cmetu11g0408 . Hepe04g1131 . . Cla01g01535 Cam01g1604 Cec04g1251 Cco04g1322 Clacu01g1630 Cmu01g1517 Cre04g1195 . . . . Lsi01g01130 . . Cme08g01062 . Blo06g00212 . . . Bpe06g00278 . . . . Cmo07g00807 . Cma20g01073 . . . Cpe16g00072 Bhi10g02339 Tan07g0883 . . Hepe08g1258 . . Cla02g00072 Cam02g0073 Cec02g0074 Cco02g0067 Clacu02g0071 Cmu02g0070 Cre02g0410 Lsi10g00709 Csa06g02804 Chy02g01031 Cme11g00076
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT2G37620 96.6 8.6e-215 742.7
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT2G37620 96.6 8.6e-215 742.7
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT2G37620 96.3 4.3e-214 740.3
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 7.3e-214 739.6
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.3e-214 739.6
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.1e-213 738.0
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT2G37620 79.0 6.8e-119 424.1
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.2e-213 738.8
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.8e-213 737.6
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.6 3.6e-213 737.3
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.8e-212 734.9
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.0 1.8e-212 734.9
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT5G59370 95.2 2.0e-211 731.5
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT5G59370 79.0 2.9e-117 418.7
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.2e-213 738.8
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.6e-213 738.4
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 3.6e-213 737.3
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT3G46520 96.6 8.1e-213 736.1
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT3G46520 96.3 8.1e-213 736.1
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT3G46520 95.5 8.9e-212 732.6
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT3G46520 79.4 9.8e-118 420.2
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.7e-215 745.0
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.0e-215 744.2
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.0e-215 744.2
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 5.1e-215 743.4
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.5e-214 741.9
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 2.8e-213 737.6
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT3G12110 79.4 6.8e-119 424.1
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.8 1.4e-209 725.3
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.4e-209 724.5
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 7.1e-209 723.0
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.1e-208 721.5
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT3G18780 91.8 4.6e-208 720.3
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 6.0e-208 719.9
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT3G18780 77.0 1.4e-116 416.4
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.1 4.9e-210 726.9
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.4e-209 724.5
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.4e-209 723.4
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.1e-209 723.0
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.0 1.6e-208 721.8
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.1e-208 721.5
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT1G49240 77.0 1.4e-116 416.4
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 2.4e-217 751.1
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT5G09810 96.8 1.5e-214 741.9
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT5G09810 96.3 7.3e-214 739.6
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT5G09810 96.6 7.3e-214 739.6
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.2e-213 738.8
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.6e-213 737.3
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT5G09810 79.4 8.9e-119 423.7
Bpe02g02225 BCT,CCT 1 131 Cytoskeleton Gene Families AT2G19760 77.1 4.4e-57 217.2
Bpe13g01272 . 1 131 Cytoskeleton Gene Families AT2G19760 76.3 5.8e-57 216.9
Bpe08g00505 CCT 1 133 Cytoskeleton Gene Families AT2G19760 75.9 4.1e-55 210.7
Bpe01g00568 BCT,CCT 1 133 Cytoskeleton Gene Families AT2G19760 74.4 6.0e-54 206.8
Bpe08g00505 CCT 1 133 Cytoskeleton Gene Families AT4G29350 77.4 3.7e-56 214.2
Bpe02g02225 BCT,CCT 1 131 Cytoskeleton Gene Families AT4G29350 76.3 8.3e-56 213.0
Bpe01g00568 BCT,CCT 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.4e-55 212.2
Bpe13g01272 . 1 131 Cytoskeleton Gene Families AT4G29350 74.8 9.2e-55 209.5
Bpe02g02225 BCT,CCT 1 87 Cytoskeleton Gene Families AT5G56600 79.3 1.4e-37 152.1
Bpe08g00505 CCT 1 133 Cytoskeleton Gene Families AT4G29340 79.1 2.3e-61 231.5
Bpe01g00568 BCT,CCT 1 133 Cytoskeleton Gene Families AT4G29340 78.4 2.0e-60 228.4
Bpe02g02225 BCT,CCT 1 131 Cytoskeleton Gene Families AT4G29340 74.6 4.5e-57 217.2
Bpe13g01272 . 1 131 Cytoskeleton Gene Families AT4G29340 74.6 7.7e-57 216.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00278 Bpe_Chr06 FPKM 19.246376 21.534536 1.002144 0.632175 0.328765 0.738737 1.46312 0.258725 1.091214 2.04149