Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00278 ATGGCAGATGGTGAGGATATTCAGCCACTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCAAGAGCTGTTTTTCCCAGTATTGTGGGGCGACCTAGACACACTGGTGTTATGGTTGGTATGGGCCAGAAAGATGCTTATGTTGGCGATGAAGCTCAGTCCAAAAGAGGTATTCTTACCTTGAAATATCCTATCGAGCATGGAATAGTCAGCAATTGGGATGACATGGAAAAGATTTGGCATCACACTTTTTACAATGAGCTTCGGGTTGCTCCTGAAGAGCACCCAGTACTGCTCACAGAGGCTCCCCTTAATCCGAAGGCTAATAGAGAAAAGATGACTCAGATCATGTTTGAAACATTTAATGTCCCTGCCATGTATGTTGCCATTCAAGCTGTTTTATCTCTGTATGCAAGTGGTCGTACAACTGGAATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTTCCCATTTACGAGGGTTATGCTCTCCCTCATGCCATTCTTCGTCTAGACCTTGCTGGTCGAGATCTTACAGATGCTTTGATGAAGATTCTAACAGAAAGAGGTTATATGTTCACCACAACTGCTGAACGGGAAATTGTCCGGGATATGAAAGAAAAGCTTGCCTATGTTGCTCTTGATTATGAACAGGAGCTGGAAACTTCTAAGAGTAGTTCCTCTGTTGAGAAGAACTATGAATTACCTGATGGTCAAGTTATTACAATTGGAGCAGAGAGATTCCGATGCCCTGAAGTCCTCTTCCAGCCATCACTCATTGGAATGGAAGCTGCTGGAATTCATGAGACTACTTACAACTCTATTATGAAGTGTGATGTGGATATCAGAAAAGATCTGTATGGAAACATTGTCCTTAGTGGTGGTTCAACTATGTTCCCTGGTATTGCTGATAGAATGAGCAAGGAAATCACAGCCCTTGCTCCTAGCAGCATGAAGATTAAGGTCGTTGCACCACCAGAAAGAAAATACAGTGTGTGGATTGGAGGTTCAATCCTTGCATCGCTCAGCACATTCCAGCAGATGTGGATCTCGAAGGGTGAGTATGATGAGTCTGGCCCATCTATTGTCCACAGAAAATGCTTCTGA 1134 43.92 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETSKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13735910 13737310 + Bpe019773.1 Bpe06g00278 105216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00278 377 Pfam Actin 5 377 IPR004000 -
Bpe06g00278 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Bpe06g00278 377 Gene3D - 140 340 - -
Bpe06g00278 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Bpe06g00278 377 Gene3D - 10 371 - -
Bpe06g00278 377 PANTHER ACTIN 1 376 IPR004000 -
Bpe06g00278 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Bpe06g00278 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Bpe06g00278 377 PRINTS Actin signature 238 254 IPR004000 -
Bpe06g00278 377 PRINTS Actin signature 51 62 IPR004000 -
Bpe06g00278 377 PRINTS Actin signature 63 85 IPR004000 -
Bpe06g00278 377 PRINTS Actin signature 142 161 IPR004000 -
Bpe06g00278 377 PRINTS Actin signature 28 37 IPR004000 -
Bpe06g00278 377 PRINTS Actin signature 117 130 IPR004000 -
Bpe06g00278 377 PANTHER ACTIN 1 376 - -
Bpe06g00278 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Bpe06g00278 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Bpe06g00278 377 SMART actin_3 7 377 IPR004000 -
Bpe06g00278 377 Gene3D Actin; Chain A, domain 4 182 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00737 Bpe-Chr3:27480402 Bpe06g00278 Bpe-Chr6:13735910 2.51E-40 dispersed
Bpe04g01709 Bpe-Chr4:22952678 Bpe06g00278 Bpe-Chr6:13735910 0 dispersed
Bpe06g00278 Bpe-Chr6:13735910 Bpe15g01288 Bpe-Chr15:21213105 0 dispersed
Bpe06g00278 Bpe-Chr6:13735910 Bpe04g01456 Bpe-Chr4:21189952 0 transposed
Bpe06g00278 Bpe-Chr6:13735910 Bpe08g00106 Bpe-Chr8:572280 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00278 K10355 - dcr:108214750 755.362