Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00279 ATGAACATTGAATCTACACTGTCAATTGGAAAACTTATCCACGGTTCACAGTACTTTGCCGTTCAAATATTTTTAACCCCGATTAACCCCCAAATTCCTATACTCCATAAATGCTGCCCACAATCACCAAAGAGTGCATCTCATTCTCCATCCTTAATTTCTATTACATCTACTTTCGATCTCGACTCTTTCCTATTTGGTAGGAAAATGGCTCGTACCAAGCAAACTGCTCGTAAATCCACTGGCGGAAAAGCTCCTCGGAAGCAATTAGCGACAAAGGCCGCAAGGAAATCAGCGCCGGCGACGGGTGGAGTTAAGAAACCGCACAGATTCAGGCCTGGAACGGTGGCTTTGAGAGAAATCCGCAAATACCAGAAGAGCACGGAGCTACTGATCCGGAAGCTTCCTTTCCAGAGGCTTGTTCGAGAAATCGCTCAAGATTTCAAAACCGATCTCCGGTTTCAAAGTAGCGCCGTCGCGGCCCTTCAGGAGGCAGCGGAGGCATACTTGGTTGGTTTGTTTGAGGATACTAATTTGTGCGCGATCCATGCTAAGAGAGTTACTATTATGCCCAAGGATATTCAACTTGCAAGGAGAATCCGAGGCGAAAGAGCTTAG 618 46.44 MNIESTLSIGKLIHGSQYFAVQIFLTPINPQIPILHKCCPQSPKSASHSPSLISITSTFDLDSFLFGRKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13738948 13739565 + Bpe019774.1 Bpe06g00279 105217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00279 205 Pfam Core histone H2A/H2B/H3/H4 70 201 IPR007125 GO:0003677
Bpe06g00279 205 ProSitePatterns Histone H3 signature 2. 136 144 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bpe06g00279 205 SMART h35 103 205 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bpe06g00279 205 PANTHER HISTONE H3 50 205 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bpe06g00279 205 SUPERFAMILY Histone-fold 71 202 IPR009072 GO:0046982
Bpe06g00279 205 ProSitePatterns Histone H3 signature 1. 84 90 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bpe06g00279 205 PRINTS Histone H3 signature 149 167 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bpe06g00279 205 PRINTS Histone H3 signature 183 204 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bpe06g00279 205 PRINTS Histone H3 signature 103 124 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bpe06g00279 205 PRINTS Histone H3 signature 127 144 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bpe06g00279 205 PRINTS Histone H3 signature 72 86 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bpe06g00279 205 PRINTS Histone H3 signature 86 100 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bpe06g00279 205 PRINTS Histone H3 signature 167 183 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bpe06g00279 205 Gene3D Histone, subunit A 71 205 IPR009072 GO:0046982
Bpe06g00279 205 MobiDBLite consensus disorder prediction 74 109 - -
Bpe06g00279 205 PANTHER - 50 205 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00279 K11253 H3; histone H3 - han:110898865 263.077
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe06g00279 Bpe10g00242 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00279 Bpe-Chr6:13738948 Bpe11g00089 Bpe-Chr11:609433 1.95E-95 dispersed
Bpe10g00242 Bpe-Chr10:9025141 Bpe06g00279 Bpe-Chr6:13738948 4.56E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1239 . . Bda04g00338 Bda10g00351 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe10g00242 Bpe06g00279 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000133 8 11 8 7 8 7 11 7 5 4 6 7 6 5 6 10 7 12 7 7 6 8 7 7 6 4 7 9 7 5 215
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00279 Bpe_Chr06 FPKM 24.524845 31.128519 9.305623 9.944164 11.9273 9.481708 8.091797 2.570922 1.610597 2.189613