Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00299 ATGAACGGTGGGAACAACCGTAAACGGCCTGCGCCGTCGCCGGCGCAGAAACCTTCTCCGTCTCCGCAGGTAGAGCGGTTGGCAACATCGCAAGAGGAAGAGTATTTGGACGAAGACGTCTTCCTCGACGAAACTCTGTTAACCGAGGACGAGCTCATCCTGCGCGACATTGAGGAGCGCCAGGCCCTCGCTTCCCGTCTCTCGAAGTGGACTCGCCCTCCGCTGTCTTCCGCTTATGTTTCTCAATCTCAGAGCGTTGTGTTTCAGCAGCTGGAGATCGACTACGTGATTGGAGAGAGTAACCGAGAATTATTGCCTAATTCCGCTGGCCCCGCCGCCATCATCAGAATTTTTGGTGTTACCAGAGAAGGACACAGTGTTTGCTGCAACGTCCATGGATTTGAACCTTACTTTTATATCAGCTGTCCTCCTGGAATGGGTCCTGATGATATCTCCCGGTTCCAACAAGTTCTTGAGGCGAGAATGAGGGAGGTAAATAAAAACAGTAAGGTGCCCAAATATGTTCATCGAATCGAGTTAGTGCAAAAAAGAAGTATCATGTACTATCAGCAACAAACGTCTCATCCTTTCCTCAAAATTGTAGTTGCACTACCAACAATGGTCACAAGCTGCCGGGGTATTCTCGACAGAGGCATACAAATTGATGGGCTTGGAATGAAGAGCTTCATGACTTATGAAAGCAATGTTCTTTTTGCTCTGCGATTCATGATTGATTGCAACATTGTTGGTGGAAATTGGATTGAAGTACCTGTGGGAAAATATAGGAAAACAGCAAAAATCCTGTCATGCTGTCAGTTGGAGTTTGATTGCCTGTATCCAATCCAATTTCTGATGCTTGACAGTATCCCCTTAACAGCCCTTGGTAGTTATTCAGAGTTGATCAGCCATGCCCCAGAAGGTGAATTTTCAAAGATGGCTCCCTTCCGGATATTGAGTTTTGATATTGAGTGTGCAGGTCGTAAAGGCCATTTTCCCGAGCCCACCCATGATCCTGTCATCCAGGTGGCCAATCTAGTTACTCTCCAAGGGGAGGAGCAGCCTTTTATCCGCAATGTCATGACCCTTAACTCTTGCTCTTCTATAGCTGGTGTTGATGTAATGTCATTTGAGACAGAAAGAGAAGTTTTACTTGCATGGAGGGATTTTATCGGCGAAGTGGACCCTGATGTGGTGATTGGATATAACATCTGCAAATTCGATTTGCCTTATCTCATCGAGAGAGCTGAGAAATTGGGAATCTCTGAATTTCCAATACTGGGTCGCATCAGAAACAGCAGGGTTCGGGTCAAAGATACAACTTTCTCTTCTAGACAGCTTGGAACTAGGGAAGGTAAAGAAATTACAATAGAAGGGAGAGTTCAGTTTGATTTGCTCCAGGTTATGCAACGTGATTACAAACTGAGTTCTTATTCACTGAATTCTGTTTCGTCACATTTTCTTTCTGAACAGAAAGAAGATGTACACCATTCTATTATATCTGATTTACAGAACGGTAATTCTGAAACCAGGAGGCGTTTGGCCGTTTATTGTTTGAAGGACGCATATCTTCCACAACGGCTGTTGGACAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTCACAGGTGTCCCAATTTCGTTTCTTCTTTCTAGAGGGCAGAGTATCAAGGTATTATCTCAACTTCTTCGGAAGGCAAAACAAAAGAATCTCGTGATTCCAAATGCGAAACAAGCAGGATCTGAGCAAGGAACTTTTGAAGGTGCCACTGTTTTAGAGGCAAGAGCAGGATTTTATGAAAAGCCCATTGCTACATTAGATTTTGCGTCTTTGTATCCCTCCATTATGATGGCATATAATTTATGTTACTGCACCTTGGTAACTCCTGAAGATGTTCGCAAACTAAACCTTCCTCAAGAACTAGTTAATAGAACTCCTTCCGGGGAAACATTTGTTCGTTCAAATTTGCAAAAGGGCATACTTCCTGAAATTCTCGAAGAACTATTAACTGCTCGAAAAAGAGCAAAAGCAGATCTAAAGGAAGCTAAAGACCCTTTTGAGAAGGCGGTATTAGATGGGCGGCAGCTGGCTTTGAAGATAAGTGCAAATTCAGTATATGGATTTACAGGAGCCACAGTTGGCCAGTTACCTTGCTTAGAGATATCTTCAAGTGTTACAAGCTATGGTCGACAAATGATTGAACACACAAAAAAGCTTGTGGGAGATAAATTTACCACAGTCGGTGGCTATGAACACAATGCTGAGGTTATATATGGCGATACAGATTCTGTGATGGTGCAGTTTGGCGTGCCCACTGTGGAAGAGGCAATGAACTTGGGAAGAGAAGCGGCTGAATATATCAGTGGCACTTTTATTGAACCCATTAAACTAGAGTTCGAGAAGGTTTATTATCCATATCTTTTAATTAGCAAAAAGAGATACGCTGGTTTGTTATGGACCAATAGGGAAAAGTTTGACAAAATGGATACAAAAGGCATTGAAACAGTTCGAAGAGACAATTGTCTGTTGGTAAAAAACCTGGTTACCGAGTGCCTGAACAAAATTCTCATTGACAGAAACATTCCTGGTGCAGTACAATATGTCAAGAACATAATTTCCGATCTTCTTATGAATCGCATGGATTTATCACTTCTGGTCATTACCAAGGGTTTGACCAAGACAGGAGATGATTATGAAGTGAAGGCAGCTCATGTCGAACTTGCTGAGCGCATGCGCAAGCACTTCAGCCTTCTATATCCTTTTTTAAACTGCCCACAACTTCCCCAAACTACAACTGTCGTTCCTTTTCCTGACCCCCATATGCAACATTATGTTGGCAGATTTTATCAGCGAGATGCTGCTACAGCTCCGAATGTTGGGGATCGAGTACCTTATGTGATAATCAAAGCCGCAAAAGGAGCGAAAGCGTACGAGAAGTCAGAAGATCCTATTTTTGTTCTAGAAAATAACATACCAATCGATCCTCAATATTATCTTGAAAATCAAATTAGCAAGCCACTATTACGAATTTTTGAACCCATATTGAAGAATGCCAGCAAGGAACTTCTTCATGGAAGTCATACACGATCAATCTTTATCTCGACTCCTTCAAACAGCGGCATAATGAAATTTGCCAAAAAACAACTTACTTGCATTGGCTGCAAAGCTCTACTGAGCAATACGGATAAAACTCTGTGCTCACATTGCAAAGGGAGGGAAGCAGAACTTTACTGCAAAGCTGTGACAAATGTATCAGAGCTTGAGATGCTTTTTGGGAGGCTGTGGACACAGTGCCAAGAATGTCAGGGATCTCTTCACCAAGATGTCCTTTGCACTAGTCGTGATTGTCCAATATTTTATCGTAGAAAGAAAGCACAGAAAGACATGGCTGAAGCCAGGATGCAATTAGATCGCTGGAATTTTTAA 3432 42.72 MNGGNNRKRPAPSPAQKPSPSPQVERLATSQEEEYLDEDVFLDETLLTEDELILRDIEERQALASRLSKWTRPPLSSAYVSQSQSVVFQQLEIDYVIGESNRELLPNSAGPAAIIRIFGVTREGHSVCCNVHGFEPYFYISCPPGMGPDDISRFQQVLEARMREVNKNSKVPKYVHRIELVQKRSIMYYQQQTSHPFLKIVVALPTMVTSCRGILDRGIQIDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKILSCCQLEFDCLYPIQFLMLDSIPLTALGSYSELISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEEQPFIRNVMTLNSCSSIAGVDVMSFETEREVLLAWRDFIGEVDPDVVIGYNICKFDLPYLIERAEKLGISEFPILGRIRNSRVRVKDTTFSSRQLGTREGKEITIEGRVQFDLLQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPQELVNRTPSGETFVRSNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVGDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEEAMNLGREAAEYISGTFIEPIKLEFEKVYYPYLLISKKRYAGLLWTNREKFDKMDTKGIETVRRDNCLLVKNLVTECLNKILIDRNIPGAVQYVKNIISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKHFSLLYPFLNCPQLPQTTTVVPFPDPHMQHYVGRFYQRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIFVLENNIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLSNTDKTLCSHCKGREAELYCKAVTNVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARMQLDRWNF 1143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14263978 14282863 - Bpe019799.1 Bpe06g00299 105237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00299 1143 MobiDBLite consensus disorder prediction 1 30 - -
Bpe06g00299 1143 Gene3D - 314 532 IPR036397 GO:0003676
Bpe06g00299 1143 Pfam C4-type zinc-finger of DNA polymerase delta 1053 1124 IPR025687 -
Bpe06g00299 1143 CDD POLBc_delta 587 1017 - -
Bpe06g00299 1143 Pfam DNA polymerase family B, exonuclease domain 121 482 IPR006133 -
Bpe06g00299 1143 SUPERFAMILY DNA/RNA polymerases 571 1018 IPR043502 -
Bpe06g00299 1143 Pfam DNA polymerase family B 546 915 IPR006134 GO:0000166|GO:0003677
Bpe06g00299 1143 Pfam DNA polymerase family B 941 1016 IPR006134 GO:0000166|GO:0003677
Bpe06g00299 1143 SUPERFAMILY Ribonuclease H-like 112 552 IPR012337 -
Bpe06g00299 1143 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 84 1143 - -
Bpe06g00299 1143 Gene3D DNA Polymerase, chain B, domain 1 91 267 - -
Bpe06g00299 1143 CDD DNA_polB_delta_exo 310 538 - -
Bpe06g00299 1143 Gene3D - 814 926 IPR042087 -
Bpe06g00299 1143 TIGRFAM pol2: DNA polymerase (pol2) 581 916 - -
Bpe06g00299 1143 Gene3D Helix hairpin bin 661 713 - -
Bpe06g00299 1143 Gene3D - 930 1026 IPR042087 -
Bpe06g00299 1143 Gene3D Palm domain of DNA polymerase 588 813 IPR023211 -
Bpe06g00299 1143 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 84 1143 - -
Bpe06g00299 1143 PRINTS DNA-directed DNA-polymerase family B signature 605 618 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bpe06g00299 1143 PRINTS DNA-directed DNA-polymerase family B signature 758 766 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bpe06g00299 1143 PRINTS DNA-directed DNA-polymerase family B signature 697 709 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bpe06g00299 1143 SMART polmehr3 313 772 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bpe06g00299 1143 ProSitePatterns DNA polymerase family B signature. 760 768 IPR017964 GO:0000166|GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00299 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] - vvi:100246530 1880.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00299 Bpe-Chr6:14263978 Bpe09g00594 Bpe-Chr9:14671232 4.98E-09 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00926 . 145 829 Core DNA Replication Machinery Family AT4G14700 62.7 1.0e-249 859.8
Bpe11g00926 . 146 829 Core DNA Replication Machinery Family AT4G12620 63.5 1.5e-256 882.5
Bpe05g00056 . 7 358 Core DNA Replication Machinery Family AT2G37560 66.2 1.0e-137 486.5
Bpe02g02014 . 1 413 Core DNA Replication Machinery Family AT2G01120 61.4 2.5e-138 488.8
Bpe05g00990 . 4 534 Core DNA Replication Machinery Family AT4G29910 56.5 8.8e-171 597.0
Bpe02g02348 . 1 324 Core DNA Replication Machinery Family AT1G26840 59.6 1.3e-93 339.7
Bpe07g00465 . 1 800 Core DNA Replication Machinery Family AT1G79150 54.6 2.3e-228 788.9
Bpe08g01190 . 1 948 Core DNA Replication Machinery Family AT1G44900 75.4 0.0e+00 1364.4
Bpe01g00814 . 1 550 Core DNA Replication Machinery Family AT5G46280 81.0 1.8e-256 881.7
Bpe15g00852 CCT,ECH 1 826 Core DNA Replication Machinery Family AT2G16440 70.2 0.0e+00 1116.3
Bpe02g02150 . 936 1646 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1075.8
Bpe08g00796 . 18 846 Core DNA Replication Machinery Family AT5G44635 69.9 0.0e+00 1113.6
Bpe10g00498 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1189.5
Bpe01g00096 . 40 517 Core DNA Replication Machinery Family AT2G29680 56.7 2.5e-148 522.3
Bpe01g00096 . 1 479 Core DNA Replication Machinery Family AT1G07270 54.8 2.6e-136 482.3
Bpe10g00347 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.6 9.3e-256 879.4
Bpe04g01592 . 28 854 Core DNA Replication Machinery Family AT3G09660 68.0 4.8e-308 1053.5
Bpe15g00015 . 5 626 Core DNA Replication Machinery Family AT2G14050 66.5 4.0e-236 814.3
Bpe05g00287 . 29 421 Core DNA Replication Machinery Family AT2G20980 53.5 1.8e-109 392.9
Bpe09g00382 . 1 142 Core DNA Replication Machinery Family AT1G80190 69.0 6.3e-55 210.7
Bpe05g00429 . 1 143 Core DNA Replication Machinery Family AT3G12530 71.3 7.7e-58 219.9
Bpe08g00963 . 1 145 Core DNA Replication Machinery Family AT3G12530 65.5 6.8e-54 206.8
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT1G19080 65.9 4.6e-68 254.2
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT3G55490 65.9 4.6e-68 254.2
Bpe14g01095 . 16 165 Core DNA Replication Machinery Family AT5G49010 66.7 1.3e-52 203.0
Bpe15g00335 . 1 1555 Core DNA Replication Machinery Family AT5G67100 57.9 0.0e+00 1691.0
Bpe10g00777 . 2 617 Core DNA Replication Machinery Family AT1G67630 60.9 3.9e-220 761.1
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe05g00690 . 1 457 Core DNA Replication Machinery Family AT5G41880 63.8 4.2e-176 614.4
Bpe06g00299 . 27 1143 Core DNA Replication Machinery Family AT5G63960 78.3 0.0e+00 1749.9
Bpe03g01146 . 4 442 Core DNA Replication Machinery Family AT2G42120 77.2 4.7e-204 707.2
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe12g00614 . 6 120 Core DNA Replication Machinery Family AT1G09815 60.2 6.3e-37 150.2
Bpe01g00239 . 4 2121 Core DNA Replication Machinery Family AT1G08260 68.6 0.0e+00 2874.0
Bpe01g00239 . 11 2228 Core DNA Replication Machinery Family AT2G27120 65.7 0.0e+00 2848.5
Bpe07g01082 . 7 460 Core DNA Replication Machinery Family AT5G22110 63.7 2.6e-171 598.6
Bpe08g00232 . 7 905 Core DNA Replication Machinery Family AT5G22010 62.6 3.1e-282 968.0
Bpe05g00631 . 4 334 Core DNA Replication Machinery Family AT1G63160 89.4 1.8e-171 598.6
Bpe02g00056 CCT 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 1.6e-178 622.1
Bpe04g00011 . 4 337 Core DNA Replication Machinery Family AT1G21690 80.6 1.6e-151 532.3
Bpe14g00388 CCT 1 363 Core DNA Replication Machinery Family AT1G77470 78.2 5.0e-159 557.4
Bpe13g01237 . 26 617 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-249 858.2
Bpe07g00251 . 34 688 Core DNA Replication Machinery Family AT2G06510 53.2 3.6e-202 701.4
Bpe12g00524 CCT 1 626 Core DNA Replication Machinery Family AT5G08020 66.0 2.1e-239 825.1
Bpe07g00755 CCT 1 625 Core DNA Replication Machinery Family AT5G08020 65.7 4.4e-237 817.4
Bpe12g00524 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 65.2 6.6e-236 813.5
Bpe07g00755 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 64.4 8.1e-234 806.6
Bpe07g00251 . 8 809 Core DNA Replication Machinery Family AT4G19130 52.9 1.2e-229 793.1
Bpe02g01809 . 1 396 Core DNA Replication Machinery Family AT5G26680 79.7 5.1e-184 640.6
Bpe04g01926 . 1 299 Core DNA Replication Machinery Family AT2G25100 67.6 9.8e-115 409.8
Bpe08g00178 . 46 802 Core DNA Replication Machinery Family AT1G08130 68.0 1.0e-289 992.6
Bpe08g00178 . 209 802 Core DNA Replication Machinery Family AT1G49250 66.8 7.9e-232 800.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011899 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00299 Bpe_Chr06 FPKM 0.0 0.0 0.164041 0.0 0.0 0.0 0.111053 0.0 0.0 0.0