Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe06g00299 | ATGAACGGTGGGAACAACCGTAAACGGCCTGCGCCGTCGCCGGCGCAGAAACCTTCTCCGTCTCCGCAGGTAGAGCGGTTGGCAACATCGCAAGAGGAAGAGTATTTGGACGAAGACGTCTTCCTCGACGAAACTCTGTTAACCGAGGACGAGCTCATCCTGCGCGACATTGAGGAGCGCCAGGCCCTCGCTTCCCGTCTCTCGAAGTGGACTCGCCCTCCGCTGTCTTCCGCTTATGTTTCTCAATCTCAGAGCGTTGTGTTTCAGCAGCTGGAGATCGACTACGTGATTGGAGAGAGTAACCGAGAATTATTGCCTAATTCCGCTGGCCCCGCCGCCATCATCAGAATTTTTGGTGTTACCAGAGAAGGACACAGTGTTTGCTGCAACGTCCATGGATTTGAACCTTACTTTTATATCAGCTGTCCTCCTGGAATGGGTCCTGATGATATCTCCCGGTTCCAACAAGTTCTTGAGGCGAGAATGAGGGAGGTAAATAAAAACAGTAAGGTGCCCAAATATGTTCATCGAATCGAGTTAGTGCAAAAAAGAAGTATCATGTACTATCAGCAACAAACGTCTCATCCTTTCCTCAAAATTGTAGTTGCACTACCAACAATGGTCACAAGCTGCCGGGGTATTCTCGACAGAGGCATACAAATTGATGGGCTTGGAATGAAGAGCTTCATGACTTATGAAAGCAATGTTCTTTTTGCTCTGCGATTCATGATTGATTGCAACATTGTTGGTGGAAATTGGATTGAAGTACCTGTGGGAAAATATAGGAAAACAGCAAAAATCCTGTCATGCTGTCAGTTGGAGTTTGATTGCCTGTATCCAATCCAATTTCTGATGCTTGACAGTATCCCCTTAACAGCCCTTGGTAGTTATTCAGAGTTGATCAGCCATGCCCCAGAAGGTGAATTTTCAAAGATGGCTCCCTTCCGGATATTGAGTTTTGATATTGAGTGTGCAGGTCGTAAAGGCCATTTTCCCGAGCCCACCCATGATCCTGTCATCCAGGTGGCCAATCTAGTTACTCTCCAAGGGGAGGAGCAGCCTTTTATCCGCAATGTCATGACCCTTAACTCTTGCTCTTCTATAGCTGGTGTTGATGTAATGTCATTTGAGACAGAAAGAGAAGTTTTACTTGCATGGAGGGATTTTATCGGCGAAGTGGACCCTGATGTGGTGATTGGATATAACATCTGCAAATTCGATTTGCCTTATCTCATCGAGAGAGCTGAGAAATTGGGAATCTCTGAATTTCCAATACTGGGTCGCATCAGAAACAGCAGGGTTCGGGTCAAAGATACAACTTTCTCTTCTAGACAGCTTGGAACTAGGGAAGGTAAAGAAATTACAATAGAAGGGAGAGTTCAGTTTGATTTGCTCCAGGTTATGCAACGTGATTACAAACTGAGTTCTTATTCACTGAATTCTGTTTCGTCACATTTTCTTTCTGAACAGAAAGAAGATGTACACCATTCTATTATATCTGATTTACAGAACGGTAATTCTGAAACCAGGAGGCGTTTGGCCGTTTATTGTTTGAAGGACGCATATCTTCCACAACGGCTGTTGGACAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTCACAGGTGTCCCAATTTCGTTTCTTCTTTCTAGAGGGCAGAGTATCAAGGTATTATCTCAACTTCTTCGGAAGGCAAAACAAAAGAATCTCGTGATTCCAAATGCGAAACAAGCAGGATCTGAGCAAGGAACTTTTGAAGGTGCCACTGTTTTAGAGGCAAGAGCAGGATTTTATGAAAAGCCCATTGCTACATTAGATTTTGCGTCTTTGTATCCCTCCATTATGATGGCATATAATTTATGTTACTGCACCTTGGTAACTCCTGAAGATGTTCGCAAACTAAACCTTCCTCAAGAACTAGTTAATAGAACTCCTTCCGGGGAAACATTTGTTCGTTCAAATTTGCAAAAGGGCATACTTCCTGAAATTCTCGAAGAACTATTAACTGCTCGAAAAAGAGCAAAAGCAGATCTAAAGGAAGCTAAAGACCCTTTTGAGAAGGCGGTATTAGATGGGCGGCAGCTGGCTTTGAAGATAAGTGCAAATTCAGTATATGGATTTACAGGAGCCACAGTTGGCCAGTTACCTTGCTTAGAGATATCTTCAAGTGTTACAAGCTATGGTCGACAAATGATTGAACACACAAAAAAGCTTGTGGGAGATAAATTTACCACAGTCGGTGGCTATGAACACAATGCTGAGGTTATATATGGCGATACAGATTCTGTGATGGTGCAGTTTGGCGTGCCCACTGTGGAAGAGGCAATGAACTTGGGAAGAGAAGCGGCTGAATATATCAGTGGCACTTTTATTGAACCCATTAAACTAGAGTTCGAGAAGGTTTATTATCCATATCTTTTAATTAGCAAAAAGAGATACGCTGGTTTGTTATGGACCAATAGGGAAAAGTTTGACAAAATGGATACAAAAGGCATTGAAACAGTTCGAAGAGACAATTGTCTGTTGGTAAAAAACCTGGTTACCGAGTGCCTGAACAAAATTCTCATTGACAGAAACATTCCTGGTGCAGTACAATATGTCAAGAACATAATTTCCGATCTTCTTATGAATCGCATGGATTTATCACTTCTGGTCATTACCAAGGGTTTGACCAAGACAGGAGATGATTATGAAGTGAAGGCAGCTCATGTCGAACTTGCTGAGCGCATGCGCAAGCACTTCAGCCTTCTATATCCTTTTTTAAACTGCCCACAACTTCCCCAAACTACAACTGTCGTTCCTTTTCCTGACCCCCATATGCAACATTATGTTGGCAGATTTTATCAGCGAGATGCTGCTACAGCTCCGAATGTTGGGGATCGAGTACCTTATGTGATAATCAAAGCCGCAAAAGGAGCGAAAGCGTACGAGAAGTCAGAAGATCCTATTTTTGTTCTAGAAAATAACATACCAATCGATCCTCAATATTATCTTGAAAATCAAATTAGCAAGCCACTATTACGAATTTTTGAACCCATATTGAAGAATGCCAGCAAGGAACTTCTTCATGGAAGTCATACACGATCAATCTTTATCTCGACTCCTTCAAACAGCGGCATAATGAAATTTGCCAAAAAACAACTTACTTGCATTGGCTGCAAAGCTCTACTGAGCAATACGGATAAAACTCTGTGCTCACATTGCAAAGGGAGGGAAGCAGAACTTTACTGCAAAGCTGTGACAAATGTATCAGAGCTTGAGATGCTTTTTGGGAGGCTGTGGACACAGTGCCAAGAATGTCAGGGATCTCTTCACCAAGATGTCCTTTGCACTAGTCGTGATTGTCCAATATTTTATCGTAGAAAGAAAGCACAGAAAGACATGGCTGAAGCCAGGATGCAATTAGATCGCTGGAATTTTTAA | 3432 | 42.72 | MNGGNNRKRPAPSPAQKPSPSPQVERLATSQEEEYLDEDVFLDETLLTEDELILRDIEERQALASRLSKWTRPPLSSAYVSQSQSVVFQQLEIDYVIGESNRELLPNSAGPAAIIRIFGVTREGHSVCCNVHGFEPYFYISCPPGMGPDDISRFQQVLEARMREVNKNSKVPKYVHRIELVQKRSIMYYQQQTSHPFLKIVVALPTMVTSCRGILDRGIQIDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTAKILSCCQLEFDCLYPIQFLMLDSIPLTALGSYSELISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEEQPFIRNVMTLNSCSSIAGVDVMSFETEREVLLAWRDFIGEVDPDVVIGYNICKFDLPYLIERAEKLGISEFPILGRIRNSRVRVKDTTFSSRQLGTREGKEITIEGRVQFDLLQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPQELVNRTPSGETFVRSNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVGDKFTTVGGYEHNAEVIYGDTDSVMVQFGVPTVEEAMNLGREAAEYISGTFIEPIKLEFEKVYYPYLLISKKRYAGLLWTNREKFDKMDTKGIETVRRDNCLLVKNLVTECLNKILIDRNIPGAVQYVKNIISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKHFSLLYPFLNCPQLPQTTTVVPFPDPHMQHYVGRFYQRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIFVLENNIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLSNTDKTLCSHCKGREAELYCKAVTNVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARMQLDRWNF | 1143 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 14263978 | 14282863 | - | Bpe019799.1 | Bpe06g00299 | 105237 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe06g00299 | 1143 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Bpe06g00299 | 1143 | Gene3D | - | 314 | 532 | IPR036397 | GO:0003676 | |
Bpe06g00299 | 1143 | Pfam | C4-type zinc-finger of DNA polymerase delta | 1053 | 1124 | IPR025687 | - | |
Bpe06g00299 | 1143 | CDD | POLBc_delta | 587 | 1017 | - | - | |
Bpe06g00299 | 1143 | Pfam | DNA polymerase family B, exonuclease domain | 121 | 482 | IPR006133 | - | |
Bpe06g00299 | 1143 | SUPERFAMILY | DNA/RNA polymerases | 571 | 1018 | IPR043502 | - | |
Bpe06g00299 | 1143 | Pfam | DNA polymerase family B | 546 | 915 | IPR006134 | GO:0000166|GO:0003677 | |
Bpe06g00299 | 1143 | Pfam | DNA polymerase family B | 941 | 1016 | IPR006134 | GO:0000166|GO:0003677 | |
Bpe06g00299 | 1143 | SUPERFAMILY | Ribonuclease H-like | 112 | 552 | IPR012337 | - | |
Bpe06g00299 | 1143 | PANTHER | DNA POLYMERASE DELTA CATALYTIC SUBUNIT | 84 | 1143 | - | - | |
Bpe06g00299 | 1143 | Gene3D | DNA Polymerase, chain B, domain 1 | 91 | 267 | - | - | |
Bpe06g00299 | 1143 | CDD | DNA_polB_delta_exo | 310 | 538 | - | - | |
Bpe06g00299 | 1143 | Gene3D | - | 814 | 926 | IPR042087 | - | |
Bpe06g00299 | 1143 | TIGRFAM | pol2: DNA polymerase (pol2) | 581 | 916 | - | - | |
Bpe06g00299 | 1143 | Gene3D | Helix hairpin bin | 661 | 713 | - | - | |
Bpe06g00299 | 1143 | Gene3D | - | 930 | 1026 | IPR042087 | - | |
Bpe06g00299 | 1143 | Gene3D | Palm domain of DNA polymerase | 588 | 813 | IPR023211 | - | |
Bpe06g00299 | 1143 | PANTHER | DNA POLYMERASE CATALYTIC SUBUNIT | 84 | 1143 | - | - | |
Bpe06g00299 | 1143 | PRINTS | DNA-directed DNA-polymerase family B signature | 605 | 618 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Bpe06g00299 | 1143 | PRINTS | DNA-directed DNA-polymerase family B signature | 758 | 766 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Bpe06g00299 | 1143 | PRINTS | DNA-directed DNA-polymerase family B signature | 697 | 709 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Bpe06g00299 | 1143 | SMART | polmehr3 | 313 | 772 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Bpe06g00299 | 1143 | ProSitePatterns | DNA polymerase family B signature. | 760 | 768 | IPR017964 | GO:0000166|GO:0003676 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe06g00299 | Bpe-Chr6:14263978 | Bpe09g00594 | Bpe-Chr9:14671232 | 4.98E-09 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe06g00299 | K02327 | - | vvi:100246530 | 1880.53 |