Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00303 ATGGCGGTGAGGATACTCCATTGTCGGACTCTGTCCTCTCTGCAATTCTCCCCCTCCATTTCCCTTTTTTCTTTCTTCTCCACTCTTCCCGTTTCCGCCACTGCCCTTCTTCCTCCTCTCCGCCTCTCCGAAGACGCCGATTTGATAAATCAGGTCCTCCTCCACCAATACAACCCCTACCATGCAATGGAATCCTCACTTCAACTCCATGGCATCTCTCTCTCTCCTCATCTTCTTGACCAAACCCTTCTTCGCCTCAAGCACAATTCCAAGATCGCTCTTGCGTTCTTCAATTATTCAAAAACTATTCCCTCCAGTCCTGCCTCCGCAACTTCCTACAATATTGTTATTGACATCCTCGGTAGGGTTCGTCAATTCGACGTTGTTTGGCAATTAATCGTTGAAATGGATCAGAGGAATCTCGAGCTCACTTCTGCTAGTTTTCTTTTGTTGATTCGCCGGTTGATTGCTGCCGGGCTGACCCGGCAAGCGATTCGGGCATTTGAAGATATGGAAAGCTTCATTGAAAATAAACCTAGTAACGAGGATTTTGTCTATTTGCTTGATACTCTTTGTAAATACGGGTACGTGAAGGTTGCTGCGGAGATTTTTAACAAGAAGAAACATGACTTTTTCTTCGATGTCAAGGTGTACACAGTTTTGATTTATGGGTGGTGTAAAGTCGGTCGGATTAACATGGCAGAGAGATTTTTCAGTGACATGATGAGTCTCGGAATTGAGCCTAACGTGGTCACTTACAATGTGTTGTTGAATGGGATTTGTAGGACGGCTAGTTTGCACCCAGATAGTAGATTTGAAACCACAATAAGGAACGCCGAGAAGATGTTTTACGAAATGCACAAACGAGGAATTGAGCCTGATGTGACTAGCTTCTCTATTGTTCTTCACGTTTATAGTCGAGCACACAAGCCCCAGTTAGCTCTTGATAAGTTGAAGCAGATGAAGGAGAGAGGATTGTGTCCCACAGTTCCCACTTATACTTCGGTCATCAAGTGTCTTTGTCAATGTGGGAGGCTCGAGGATGCCGAGGAGTTGCTCGATGAGATGGTAGGAAGTGGAGTTAGTCCATCTGCAATAACTTATAATTGTTTTTTCAAAGAGTACAGGGGGGCAAAAGACGGAGCTCAAGCATTGAATCTGTATAGGAAGATGAAGGGTAGTGATTTGTGTTCATTAAGTTTGCATTCGTATAATATACTATTGGGTATGTTTCTACAACTGAATAAAATGAAGAATCTGCAAGAAATATGGGATGACATGAAGAACTGTGGACAAGGCCCGGATTTGGATTCTTATACGGTGGTGGTTCATGGATTATGTGAGAAGCAAAAATGGAGACAGGCTTGTCAGTTTTTTGTGGAGATGATCGAGAAGGGATTTCTTCCTCGAAAAGTTACTTTTGAAACCCTTTACAAGGGGTTGATACAGTCTGATATGTTGAGAACGTGGAGAAGATTGAAGAAGAAGCTGGATCAAGAGTCCATTGCATTTGGAGCAGAGTTTCAGAATTATCACCTCAAGCCATATCGAAGATGA 1557 43.29 MAVRILHCRTLSSLQFSPSISLFSFFSTLPVSATALLPPLRLSEDADLINQVLLHQYNPYHAMESSLQLHGISLSPHLLDQTLLRLKHNSKIALAFFNYSKTIPSSPASATSYNIVIDILGRVRQFDVVWQLIVEMDQRNLELTSASFLLLIRRLIAAGLTRQAIRAFEDMESFIENKPSNEDFVYLLDTLCKYGYVKVAAEIFNKKKHDFFFDVKVYTVLIYGWCKVGRINMAERFFSDMMSLGIEPNVVTYNVLLNGICRTASLHPDSRFETTIRNAEKMFYEMHKRGIEPDVTSFSIVLHVYSRAHKPQLALDKLKQMKERGLCPTVPTYTSVIKCLCQCGRLEDAEELLDEMVGSGVSPSAITYNCFFKEYRGAKDGAQALNLYRKMKGSDLCSLSLHSYNILLGMFLQLNKMKNLQEIWDDMKNCGQGPDLDSYTVVVHGLCEKQKWRQACQFFVEMIEKGFLPRKVTFETLYKGLIQSDMLRTWRRLKKKLDQESIAFGAEFQNYHLKPYRR 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14355437 14356993 + Bpe019803.1 Bpe06g00303 105241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00303 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Bpe06g00303 518 Gene3D Tetratricopeptide repeat domain 60 178 IPR011990 GO:0005515
Bpe06g00303 518 Gene3D Tetratricopeptide repeat domain 179 273 IPR011990 GO:0005515
Bpe06g00303 518 Gene3D Tetratricopeptide repeat domain 274 375 IPR011990 GO:0005515
Bpe06g00303 518 Gene3D Tetratricopeptide repeat domain 376 503 IPR011990 GO:0005515
Bpe06g00303 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Bpe06g00303 518 Pfam PPR repeat 112 140 IPR002885 -
Bpe06g00303 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Bpe06g00303 518 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 517 - -
Bpe06g00303 518 TIGRFAM PPR: pentatricopeptide repeat domain 438 469 IPR002885 -
Bpe06g00303 518 TIGRFAM PPR: pentatricopeptide repeat domain 297 330 IPR002885 -
Bpe06g00303 518 TIGRFAM PPR: pentatricopeptide repeat domain 112 144 IPR002885 -
Bpe06g00303 518 TIGRFAM PPR: pentatricopeptide repeat domain 332 364 IPR002885 -
Bpe06g00303 518 TIGRFAM PPR: pentatricopeptide repeat domain 217 250 IPR002885 -
Bpe06g00303 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 143 IPR002885 -
Bpe06g00303 518 Pfam PPR repeat family 214 262 IPR002885 -
Bpe06g00303 518 Pfam PPR repeat family 402 447 IPR002885 -
Bpe06g00303 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 294 328 IPR002885 -
Bpe06g00303 518 PANTHER OS08G0369200 PROTEIN 21 517 - -
Bpe06g00303 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Bpe06g00303 518 Pfam PPR repeat 324 357 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00303 - - - jre:108996297 741.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00303 Bpe-Chr6:14355437 Bpe08g01011 Bpe-Chr8:12409519 1.08E-07 dispersed
Bpe12g00519 Bpe-Chr12:11032525 Bpe06g00303 Bpe-Chr6:14355437 4.89E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe06g00303 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012927 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 0 3 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00303 Bpe_Chr06 FPKM 32.153301 31.123055 20.333256 21.259094 43.666016 43.219894 43.514519 35.64027 41.784645 42.138195