Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00305 ATGAAGGTGGTTGATGATCATTCTGTCGGAAAACCTGACAGCGCCGGTCGACGGACGGTCATTGTAGGATTGAAGTCGGTGCCGGAGAGCAGGAAGTTGCTTACTTGGGCTATGGTCAAAGTGGCTCAGCCTGGCGATTCTGTCGTCGCTCTTCATGTCCTTGATTCCATTTCTGGTTTTTGCAGCCTGAAGAAGGTTGAGCTACAGCTTAAACTGTGTAGGGGTTCTCCGGTGAAGAAAATTCTCAACCGGGAAGTGAAATTGTACCCGGCTGCCACTTTAATGGTCGGAACTTCTGAAAATCGATGTCGACTCCGGTCATCACTGTCCGTTGCCAAGTACTGCGCTAGAAAATTGGGGATGAATTTCACTGTTATTGCTGTTAATGATGCAAAGGTTGTCTTCCAAAATGGAAATCTTGACCAATTCAAAGATGACGATGCTTGCGACAAACAGATCGATTTGGCCGAAACATCATCGGACCAAAGTACTGATGTACTAACTTCAGATCATCCTCCTAATTGCTCACTAAAATCCAGTTCAGATTCTTGGAAGATTGTACCCAATCGGATGGCGTTGCCCGCCGTGTTAATGAACAGTTCTTCGTCTATTGCATATCCAGATTGGAAGCTGAATATTTGCAGTGATGATGATCAAAATGACCTTTCTTTACTTCCGCGACAAAGTGGCACCATTGCTCCGTTTGGTTCGCTTGAGATTATTCCAAAAACATTGTTGGAATCGCTTCTCAAACAGGCAAGTACATGCAGATTGTTTACATATCAGGAGCTTTTGCTGGCAACATCTAACTTCGCACCCGAGAATCTTATCGGGAGAGGCGGTAGTAGTCGAGTTTATTGGGGGTGTCTCCCAAATGGCAAGGAATTGGCAGTGAAAATTTTGAAGCCATCAAAAGATGTGGTAAAGGAGTTTATGCAGGAAATTGAGATCATCACAACTTTGCACCACAAGAACATAATTTCCCTCAATGGCTTCTGTTTTGAGGAAAACAACTTACTCCTAGTCTATAATTTTCTCTCGAGAGGAAGCCTAGAGGACAATCTTCACGGCAATATGAAGGACTCAAATTTGTTCGGTTGGCAAGAGAGATTCAAGGTTGCAGTTGGTGTAGCGGAGGCACTTAATTATTTACACAATTTGAGTGCCGACCCTGTCATCCACAAAGACGTCAAGTCTTCGAACATTCTTCTCTCTGAGGATTTTGAACCTCAGCTTTCAGATTTTGGACTTTCTAGTCGCGCTTCCTCTTCGTCCCACATTACTTGCATGGATGTGACGGGAACATTTGGTTATTTAGCTCCGGAGTACTTCATGTATGGAAAAGTTAGCGACAAAATTGATGTTTATGCGTTTGGTGTCGTTCTCCTCGAACTACTTTCAGGTAGAAAGTCAATCAATAATGAGTATGCGAAGGGCCGAGAAAGCCTTTTAGTGTGGGCAAAACCAATTTTGAAGATCGGGAAAGTTTCTAAGCTGCTCGATCCAAGTTTGGTACGTGATTACAATCATGATCAAATCGGAAGAATGATATTGGCCGCGACGCTTTGCATAAGACGTTCCCCAAGATATCGTCCTCAGATCGGACTCATTTTGAAACTTCTGCAAGGGGACGACGAGATCACAAATTGGGCAAGGCGACAAGTTGTTCATCCCGAAGGACACGATGCTTCGGAGGAAGAACCATTTCCTGCTAACATCCAATCTTATTTAAACACTGCACTTCTAGACTTGGAGGATGACTCGTTTTCTCTGTCGAGTGGCGAACAAAGTGTCTCGTTGGAGGATTACCTTCGAGGCAGATGGAGCCGTTGTTCGAGCTTTAATTAG 1848 44.21 MKVVDDHSVGKPDSAGRRTVIVGLKSVPESRKLLTWAMVKVAQPGDSVVALHVLDSISGFCSLKKVELQLKLCRGSPVKKILNREVKLYPAATLMVGTSENRCRLRSSLSVAKYCARKLGMNFTVIAVNDAKVVFQNGNLDQFKDDDACDKQIDLAETSSDQSTDVLTSDHPPNCSLKSSSDSWKIVPNRMALPAVLMNSSSSIAYPDWKLNICSDDDQNDLSLLPRQSGTIAPFGSLEIIPKTLLESLLKQASTCRLFTYQELLLATSNFAPENLIGRGGSSRVYWGCLPNGKELAVKILKPSKDVVKEFMQEIEIITTLHHKNIISLNGFCFEENNLLLVYNFLSRGSLEDNLHGNMKDSNLFGWQERFKVAVGVAEALNYLHNLSADPVIHKDVKSSNILLSEDFEPQLSDFGLSSRASSSSHITCMDVTGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELLSGRKSINNEYAKGRESLLVWAKPILKIGKVSKLLDPSLVRDYNHDQIGRMILAATLCIRRSPRYRPQIGLILKLLQGDDEITNWARRQVVHPEGHDASEEEPFPANIQSYLNTALLDLEDDSFSLSSGEQSVSLEDYLRGRWSRCSSFN 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14360402 14363804 - Bpe019804.1 Bpe06g00305 105243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00305 615 PANTHER OS01G0253100 PROTEIN 54 158 IPR045271 GO:0004714|GO:0006468
Bpe06g00305 615 SUPERFAMILY Protein kinase-like (PK-like) 253 541 IPR011009 -
Bpe06g00305 615 PANTHER OS01G0253100 PROTEIN 18 56 IPR045271 GO:0004714|GO:0006468
Bpe06g00305 615 PANTHER OS01G0253100 PROTEIN 222 609 IPR045271 GO:0004714|GO:0006468
Bpe06g00305 615 CDD USP_Like 19 118 - -
Bpe06g00305 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Bpe06g00305 615 SMART serkin_6 271 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe06g00305 615 Gene3D Transferase(Phosphotransferase) domain 1 346 557 - -
Bpe06g00305 615 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 222 609 - -
Bpe06g00305 615 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 18 56 - -
Bpe06g00305 615 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 54 158 - -
Bpe06g00305 615 Gene3D Phosphorylase Kinase; domain 1 241 345 - -
Bpe06g00305 615 ProSitePatterns Protein kinases ATP-binding region signature. 277 299 IPR017441 GO:0005524
Bpe06g00305 615 Pfam Protein kinase domain 274 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe06g00305 615 ProSiteProfiles Protein kinase domain profile. 271 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00305 - - - jre:108996296 671.774
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe06g00305 Bpe13g00054 CCT
Bpe06g00305 Bpe13g00054 ECH
Bpe06g00305 Bpe10g00266 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00289 Bpe-Chr5:16089315 Bpe06g00305 Bpe-Chr6:14360402 4.83E-115 dispersed
Bpe06g00305 Bpe-Chr6:14360402 Bpe07g00715 Bpe-Chr7:13742928 6.82E-134 dispersed
Bpe02g01658 Bpe-Chr2:19285046 Bpe06g00305 Bpe-Chr6:14360402 1.42E-22 transposed
Bpe13g00054 Bpe-Chr13:1593019 Bpe06g00305 Bpe-Chr6:14360402 0 transposed
Bpe14g00084 Bpe-Chr14:1362512 Bpe06g00305 Bpe-Chr6:14360402 3.84E-71 transposed
Bpe10g00266 Bpe-Chr10:9956217 Bpe06g00305 Bpe-Chr6:14360402 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1322 . Blo16g00554 . . . Bpe13g00054 . Bma15g00776 Cmo02g00650 Cmo20g01056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00187 . . Bpe10g00266 Bpe06g00305 . Bma06g00472 . . . . Cma20g01050 . . Cpe05g01044 Cpe16g00096 Bhi10g01716 . . . . . . Cla02g00030 . . . . . . Lsi10g00758 . . Cme11g00032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005017 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 0 1 1 1 0 0 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63387 PF00069 Pkinase 3.10E-42 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00305 Bpe_Chr06 FPKM 1.270632 1.982445 2.688522 2.723476 2.212195 1.916907 1.850466 1.39952 1.632328 1.563795