Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00445 ATGGCCAACAAAGCTCCAATCTCCACCCGCAACTCTGCACTTATTGCCATGATAGCTGATGAAGACACAGTTGTTGGATTTCTGCTGGCTGGAGTAGGTAATGTTGACCTGAGGAGAAAGACAAATTACCTTATTGTGGACTCAAAAACAACGGTTAAACAAATTGAAGATGCCTTCAAGGAGTTCACAACAAGGGAGGATATTGCTGTAGTGCTTATCAGCCAATACGTTGCAAACATGATGAGGTTTTTGGTGGACAGCTACAACAAGCCAATTCCAGCAATTCTGGAGATTCCTTCGAAAAATCATCCTTATGATCCCACTCAAGACTCCATCCTGTCACGAGTGAAGCATCTATTTTCTGCCGAGTCGGTGGCATCTGGTAGGCGCTGA 393 44.53 MANKAPISTRNSALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFKEFTTREDIAVVLISQYVANMMRFLVDSYNKPIPAILEIPSKNHPYDPTQDSILSRVKHLFSAESVASGRR 130
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 15802263 15804215 - Bpe019948.1 Bpe06g00445 105383

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00445 130 TIGRFAM V_ATP_synt_F: V-type ATPase, F subunit 10 124 IPR005772 GO:0033180|GO:0046961|GO:1902600
Bpe06g00445 130 SUPERFAMILY AtpF-like 15 118 IPR036906 GO:0034220
Bpe06g00445 130 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT F 1 130 - -
Bpe06g00445 130 Pfam ATP synthase (F/14-kDa) subunit 15 116 IPR008218 GO:0034220|GO:0046961
Bpe06g00445 130 PANTHER V-TYPE PROTON ATPASE SUBUNIT F 1 130 - -
Bpe06g00445 130 PIRSF V-ATP_synth_F 3 123 IPR005772 GO:0033180|GO:0046961|GO:1902600
Bpe06g00445 130 Gene3D ATPase, V1 complex, subunit F 9 122 IPR036906 GO:0034220
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00445 K02151 ATPeV1F, ATP6S14; V-type H+-transporting ATPase subunit F - csin:114282909 233.802
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00391 Bpe-Chr10:11469832 Bpe06g00445 Bpe-Chr6:15802263 1.59E-81 wgd
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe05g00018 . 1 732 Primary Pumps ATPases(2) AT1G10130 77.5 0.0e+00 1151.7
Bpe08g00136 CCT 1 792 Primary Pumps ATPases(2) AT2G28520 76.9 0.0e+00 1247.6
Bpe01g00166 CCT 1 814 Primary Pumps ATPases(2) AT2G28520 74.5 0.0e+00 1225.3
Bpe12g00089 CCT,ECH 10 787 Primary Pumps ATPases(2) AT2G28520 61.4 1.4e-281 965.7
Bpe15g00852 CCT,ECH 815 1578 Primary Pumps ATPases(2) AT2G28520 58.9 5.4e-262 900.6
Bpe05g00122 . 1 770 Primary Pumps ATPases(2) AT2G28520 53.5 4.7e-242 834.3
Bpe12g00089 CCT,ECH 6 792 Primary Pumps ATPases(2) AT2G21410 74.3 0.0e+00 1200.3
Bpe15g00852 CCT,ECH 815 1582 Primary Pumps ATPases(2) AT2G21410 71.5 0.0e+00 1112.8
Bpe05g00122 . 1 774 Primary Pumps ATPases(2) AT2G21410 61.7 3.2e-283 971.1
Bpe08g00136 CCT 9 797 Primary Pumps ATPases(2) AT2G21410 59.4 5.2e-281 963.8
Bpe01g00166 CCT 9 818 Primary Pumps ATPases(2) AT2G21410 59.0 7.5e-280 959.9
Bpe12g00089 CCT,ECH 8 792 Primary Pumps ATPases(2) AT4G39080 75.2 0.0e+00 1201.4
Bpe15g00852 CCT,ECH 815 1582 Primary Pumps ATPases(2) AT4G39080 72.1 0.0e+00 1121.3
Bpe05g00122 . 1 774 Primary Pumps ATPases(2) AT4G39080 62.7 7.5e-288 986.5
Bpe08g00136 CCT 9 797 Primary Pumps ATPases(2) AT4G39080 59.8 3.1e-278 954.5
Bpe01g00166 CCT 9 818 Primary Pumps ATPases(2) AT4G39080 59.5 7.0e-278 953.4
Bpe05g00312 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.4e-61 230.3
Bpe07g00494 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.4e-61 230.3
Bpe02g01721 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.4e-61 230.3
Bpe05g00130 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.2e-60 229.2
Bpe07g00494 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.8 6.5e-68 253.8
Bpe05g00312 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 5.5e-67 250.8
Bpe05g00130 BCT 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.2e-66 249.6
Bpe02g01721 BCT 3 165 Primary Pumps ATPases(2) AT1G75630 80.7 2.1e-66 248.8
Bpe05g00312 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.7e-74 275.4
Bpe02g01721 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 2.2e-74 275.0
Bpe05g00130 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 3.8e-74 274.2
Bpe07g00494 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 1.1e-73 272.7
Bpe05g00312 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.0e-52 202.6
Bpe05g00130 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.3e-52 201.4
Bpe02g01721 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.3e-52 201.4
Bpe07g00494 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.8e-52 199.9
Bpe04g00047 BCT 1 180 Primary Pumps ATPases(2) AT2G25610 86.7 4.6e-70 261.2
Bpe02g00579 BCT 1 180 Primary Pumps ATPases(2) AT2G25610 87.2 1.7e-69 259.2
Bpe05g00312 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.5e-60 228.8
Bpe07g00494 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.5e-60 228.8
Bpe02g01721 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.5e-60 228.8
Bpe05g00130 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.4e-60 227.6
Bpe04g00047 BCT 1 180 Primary Pumps ATPases(2) AT4G32530 69.0 5.7e-67 250.8
Bpe02g00579 BCT 1 180 Primary Pumps ATPases(2) AT4G32530 69.5 1.7e-66 249.2
Bpe08g00127 CCT,ECH 1 1066 Primary Pumps ATPases(2) AT1G07810 81.3 0.0e+00 1691.0
Bpe01g00156 CCT,ECH 822 1539 Primary Pumps ATPases(2) AT1G07810 78.9 0.0e+00 1097.0
Bpe08g00127 CCT,ECH 1 1066 Primary Pumps ATPases(2) AT1G07670 80.7 0.0e+00 1686.8
Bpe01g00156 CCT,ECH 822 1539 Primary Pumps ATPases(2) AT1G07670 78.2 0.0e+00 1094.3
Bpe05g00018 . 1 732 Primary Pumps ATPases(2) AT1G10130 77.5 0.0e+00 1151.7
Bpe08g00127 CCT,ECH 21 1047 Primary Pumps ATPases(2) AT4G00900 66.3 0.0e+00 1330.1
Bpe01g00156 CCT,ECH 822 1521 Primary Pumps ATPases(2) AT4G00900 65.3 1.9e-256 882.5
Bpe06g00445 . 1 126 Primary Pumps ATPases(2) AT4G02620 81.7 2.4e-55 211.5
Bpe10g00391 . 1 145 Primary Pumps ATPases(2) AT4G02620 66.9 7.4e-49 189.9
Bpe15g00802 CCT,ECH 6 488 Primary Pumps ATPases(2) AT1G76030 95.2 2.5e-267 917.5
Bpe12g00130 CCT,ECH 6 505 Primary Pumps ATPases(2) AT1G76030 92.4 1.1e-265 912.1
Bpe14g01359 . 1 369 Primary Pumps ATPases(2) AT1G12840 78.1 2.1e-168 588.6
Bpe12g00278 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.8 4.4e-117 417.5
Bpe03g00961 . 5 448 Primary Pumps ATPases(2) AT3G42050 78.4 2.9e-201 698.0
Bpe05g00312 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.7e-74 275.4
Bpe02g01721 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 2.2e-74 275.0
Bpe05g00130 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 3.8e-74 274.2
Bpe07g00494 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 1.1e-73 272.7
Bpe15g00802 CCT,ECH 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 8.5e-271 929.1
Bpe12g00130 CCT,ECH 1 505 Primary Pumps ATPases(2) AT4G38510 93.1 6.1e-269 922.9
Bpe07g00081 BCT 1 183 Primary Pumps ATPases(2) AT1G64200 75.4 5.6e-69 257.3
Bpe15g00802 CCT,ECH 9 488 Primary Pumps ATPases(2) AT1G20260 95.6 7.4e-267 916.0
Bpe12g00130 CCT,ECH 9 505 Primary Pumps ATPases(2) AT1G20260 92.8 4.0e-265 910.2
Bpe08g00136 CCT 1 792 Primary Pumps ATPases(2) AT2G28520 76.9 0.0e+00 1247.6
Bpe01g00166 CCT 1 814 Primary Pumps ATPases(2) AT2G28520 74.5 0.0e+00 1225.3
Bpe12g00089 CCT,ECH 10 787 Primary Pumps ATPases(2) AT2G28520 61.4 1.4e-281 965.7
Bpe15g00852 CCT,ECH 815 1578 Primary Pumps ATPases(2) AT2G28520 58.9 5.4e-262 900.6
Bpe05g00122 . 1 770 Primary Pumps ATPases(2) AT2G28520 53.5 4.7e-242 834.3
Bpe11g01569 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.5 2.1e-191 664.8
Bpe07g00081 BCT 1 220 Primary Pumps ATPases(2) AT4G11150 78.6 4.1e-90 327.8
Bpe06g00825 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.6 0.0e+00 1173.3
Bpe10g00735 . 1 623 Primary Pumps ATPases(2) AT1G78900 92.5 0.0e+00 1162.5
Bpe15g00802 CCT,ECH 6 488 Primary Pumps ATPases(2) AT1G76030 95.2 2.5e-267 917.5
Bpe12g00130 CCT,ECH 6 505 Primary Pumps ATPases(2) AT1G76030 92.4 1.1e-265 912.1
Bpe15g00802 CCT,ECH 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 8.5e-271 929.1
Bpe12g00130 CCT,ECH 1 505 Primary Pumps ATPases(2) AT4G38510 93.1 6.1e-269 922.9
Bpe15g00802 CCT,ECH 9 488 Primary Pumps ATPases(2) AT1G20260 95.6 7.4e-267 916.0
Bpe12g00130 CCT,ECH 9 505 Primary Pumps ATPases(2) AT1G20260 92.8 4.0e-265 910.2
Bpe14g01359 . 1 369 Primary Pumps ATPases(2) AT1G12840 78.1 2.1e-168 588.6
Bpe12g00278 . 1 261 Primary Pumps ATPases(2) AT3G58730 82.8 4.4e-117 417.5
Bpe07g00081 BCT 1 220 Primary Pumps ATPases(2) AT4G11150 78.6 4.1e-90 327.8
Bpe07g00081 BCT 1 220 Primary Pumps ATPases(2) AT3G08560 69.4 1.1e-79 293.1
Bpe07g00081 BCT 1 183 Primary Pumps ATPases(2) AT1G64200 75.4 5.6e-69 257.3
Bpe06g00445 . 1 126 Primary Pumps ATPases(2) AT4G02620 81.7 2.4e-55 211.5
Bpe10g00391 . 1 145 Primary Pumps ATPases(2) AT4G02620 66.9 7.4e-49 189.9
Bpe03g00961 . 5 448 Primary Pumps ATPases(2) AT3G42050 78.4 2.9e-201 698.0
Bpe08g00136 CCT 1 792 Primary Pumps ATPases(2) AT2G28520 76.9 0.0e+00 1247.6
Bpe01g00166 CCT 1 814 Primary Pumps ATPases(2) AT2G28520 74.5 0.0e+00 1225.3
Bpe12g00089 CCT,ECH 10 787 Primary Pumps ATPases(2) AT2G28520 61.4 1.4e-281 965.7
Bpe15g00852 CCT,ECH 815 1578 Primary Pumps ATPases(2) AT2G28520 58.9 5.4e-262 900.6
Bpe05g00122 . 1 770 Primary Pumps ATPases(2) AT2G28520 53.5 4.7e-242 834.3
Bpe12g00089 CCT,ECH 6 792 Primary Pumps ATPases(2) AT2G21410 74.3 0.0e+00 1200.3
Bpe15g00852 CCT,ECH 815 1582 Primary Pumps ATPases(2) AT2G21410 71.5 0.0e+00 1112.8
Bpe05g00122 . 1 774 Primary Pumps ATPases(2) AT2G21410 61.7 3.2e-283 971.1
Bpe08g00136 CCT 9 797 Primary Pumps ATPases(2) AT2G21410 59.4 5.2e-281 963.8
Bpe01g00166 CCT 9 818 Primary Pumps ATPases(2) AT2G21410 59.0 7.5e-280 959.9
Bpe12g00089 CCT,ECH 8 792 Primary Pumps ATPases(2) AT4G39080 75.2 0.0e+00 1201.4
Bpe15g00852 CCT,ECH 815 1582 Primary Pumps ATPases(2) AT4G39080 72.1 0.0e+00 1121.3
Bpe05g00122 . 1 774 Primary Pumps ATPases(2) AT4G39080 62.7 7.5e-288 986.5
Bpe08g00136 CCT 9 797 Primary Pumps ATPases(2) AT4G39080 59.8 3.1e-278 954.5
Bpe01g00166 CCT 9 818 Primary Pumps ATPases(2) AT4G39080 59.5 7.0e-278 953.4
Bpe05g00312 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.4e-61 230.3
Bpe07g00494 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.4e-61 230.3
Bpe02g01721 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.4e-61 230.3
Bpe05g00130 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.2e-60 229.2
Bpe05g00312 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.0e-52 202.6
Bpe05g00130 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.3e-52 201.4
Bpe02g01721 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 2.3e-52 201.4
Bpe07g00494 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.8e-52 199.9
Bpe05g00312 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.5e-60 228.8
Bpe07g00494 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.5e-60 228.8
Bpe02g01721 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.5e-60 228.8
Bpe05g00130 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.4e-60 227.6
Bpe07g00494 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.8 6.5e-68 253.8
Bpe05g00312 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 5.5e-67 250.8
Bpe05g00130 BCT 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.2e-66 249.6
Bpe02g01721 BCT 3 165 Primary Pumps ATPases(2) AT1G75630 80.7 2.1e-66 248.8
Bpe05g00312 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.7e-74 275.4
Bpe02g01721 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 2.2e-74 275.0
Bpe05g00130 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 3.8e-74 274.2
Bpe07g00494 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 1.1e-73 272.7
Bpe04g00047 BCT 1 180 Primary Pumps ATPases(2) AT4G32530 69.0 5.7e-67 250.8
Bpe02g00579 BCT 1 180 Primary Pumps ATPases(2) AT4G32530 69.5 1.7e-66 249.2
Bpe04g00047 BCT 1 180 Primary Pumps ATPases(2) AT2G25610 86.7 4.6e-70 261.2
Bpe02g00579 BCT 1 180 Primary Pumps ATPases(2) AT2G25610 87.2 1.7e-69 259.2
Bpe11g01569 . 1 351 Primary Pumps ATPases(2) AT3G28710 93.7 1.8e-198 688.3
Bpe11g01569 . 1 351 Primary Pumps ATPases(2) AT3G28715 91.5 2.1e-191 664.8
Bpe08g00127 CCT,ECH 1 1066 Primary Pumps ATPases(2) AT1G07810 81.3 0.0e+00 1691.0
Bpe01g00156 CCT,ECH 822 1539 Primary Pumps ATPases(2) AT1G07810 78.9 0.0e+00 1097.0
Bpe08g00127 CCT,ECH 21 1047 Primary Pumps ATPases(2) AT4G00900 66.3 0.0e+00 1330.1
Bpe01g00156 CCT,ECH 822 1521 Primary Pumps ATPases(2) AT4G00900 65.3 1.9e-256 882.5
Bpe05g00018 . 1 732 Primary Pumps ATPases(2) AT1G10130 77.5 0.0e+00 1151.7
Bpe08g00127 CCT,ECH 1 1066 Primary Pumps ATPases(2) AT1G07670 80.7 0.0e+00 1686.8
Bpe01g00156 CCT,ECH 822 1539 Primary Pumps ATPases(2) AT1G07670 78.2 0.0e+00 1094.3
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003865 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 0 2 1 2 2 2 1 43
       

Transcriptome


Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00445 Bpe_Chr06 FPKM 7.832016 8.938958 7.200679 6.664782 6.015326 5.664439 5.43333 10.343471 10.111641 9.046716