Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00450 ATGCTCCCCACTGCCATCTCCAGTTCAACGTCCTTGTCTGAGGAAGCTTCTGCAACTAAAGTTCAAGACTTTGGTTGTTCAAATCCACTTCTTTCAGCCATTTCTGTTCCTCAACAACCCGATCAAAAAATTAAGAAAAAAAGAAGCTTACCAGGAAACCCAGACCCAGATGCTGAAGTGATTGCTTTATCTCCCAAAACTTTATTAGCCACAAATAGATTCGTGTGTGAGATTTGCAACAAAGGGTTTCAGAGAGATCAAAACCTGCAGCTTCACAGAAGAGGCCACAATCTGCCATGGAAATTAAAGCAAAGAAATAGCAAAGAGATTAAAAAGAAAGCTTATGTCTGCCCAGAACCTTCTTGTGTTCATCACCATCCTTCAAGAGCTCTGGGGGATTTAACCGGGATCAAGAAACATTTCTGCAGAAAACACGGGGAGAAGAAATGGAAGTGTGAAAAATGCTCGAAGGTCTACGCAGTTCAATCAGATTGGAAGGCTCACTCCAAAACTTGTGGCACTAGGGAATATAGATGTGCTTGTGGAACCCTTTTCTCCAGGAAGGATAGCTACGTCACACATAGAGCATTCTGCGATGCTTTAGCAGAAGAAAGCGCTCGACTTTCTGCTAACCAAATAGCCTTAACTACCATTTCCACCACAGCCACCGCAGAAAAGTTCCAACCTTTCTCAACCCACCTCCACTTTCCACACCCAAACCCTAACCCTACCCCTCACTACAATCTCCTCCAAAACCCACCTCTTACCAAGTCCGAAAGAGACTGCCATGTTTTCCAATTCCCTCCCATCGTCTCCCTCCCTCCGGTGGCAACTACCCCCTCTCCTCTATTCCCAATGCATGATCTTTCCCCAACATTCCGCCATCCCATGCATGTGACGTCGGCCTCTGCTGCTTTGTCAGCCACTGCGCTGCTCCAGAAGGCTGCCACCGTTGGCCCTGCACCCACTTCTGTTCGACTGGCGCAGCCTGCATGCCATGTGGCTAACGACCACCTTGACATTGGTGAGTTTGGGAGGTCAAGTCAGATGAACTCGGTGCATTGTATCTCGCCGGAGTATCACCTTGGTGGGGTCACTTCCACCTGTCTCTCAGCCACGTGGCATACTAGTGATCATCTGACGAGGGACTTTCTTGGTCTGACAAGCGATGCCCGCAGAGGTCCTGGCAACGGAGGTAGAAATGGGGTAGACGTTGACGTTAGCACAAGAGTAGAGGAAATGCAATCTTACACACAGGGCTTACATTTTCGACAGAATGAGCGGGACCAATCCTTGCGTAAGTCTCATGATTATGGATTCCCCGAGCCAGCTTCGTCCAAAGCTTGGGAGGATTGCTAG 1359 48.34 MLPTAISSSTSLSEEASATKVQDFGCSNPLLSAISVPQQPDQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEIKKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCACGTLFSRKDSYVTHRAFCDALAEESARLSANQIALTTISTTATAEKFQPFSTHLHFPHPNPNPTPHYNLLQNPPLTKSERDCHVFQFPPIVSLPPVATTPSPLFPMHDLSPTFRHPMHVTSASAALSATALLQKAATVGPAPTSVRLAQPACHVANDHLDIGEFGRSSQMNSVHCISPEYHLGGVTSTCLSATWHTSDHLTRDFLGLTSDARRGPGNGGRNGVDVDVSTRVEEMQSYTQGLHFRQNERDQSLRKSHDYGFPEPASSKAWEDC 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15883216 15885142 - Bpe019952.1 Bpe06g00450 105388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00450 452 MobiDBLite consensus disorder prediction 426 452 - -
Bpe06g00450 452 SMART c2h2final6 74 96 IPR013087 -
Bpe06g00450 452 SMART c2h2final6 150 170 IPR013087 -
Bpe06g00450 452 Pfam Zinc finger, C2H2 type 74 96 IPR013087 -
Bpe06g00450 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Bpe06g00450 452 Gene3D Classic Zinc Finger 70 97 - -
Bpe06g00450 452 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
Bpe06g00450 452 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Bpe06g00450 452 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 5 435 - -
Bpe06g00450 452 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 435 - -
Bpe06g00450 452 MobiDBLite consensus disorder prediction 38 58 - -
Bpe06g00450 452 Gene3D Classic Zinc Finger 109 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00450 Bpe-Chr6:15883216 Bpe10g00383 Bpe-Chr10:11416587 0 dispersed
Bpe06g00450 Bpe-Chr6:15883216 Bpe09g00021 Bpe-Chr9:171971 8.55E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21568 PF00096 zf-C2H2 0.0045 CL0361 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00450 K25870 - pop:7476863 487.263