Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00451 ATGGATCCTTACTATCCAGTGAAGGAAGAGTGCCCAGGATCGAGCTCCGCTGAGATGGGTGGATCAGCCGGAAGTCCACCGTTGCCGATGGAGGGTCTGAACGATGCGGGTCCTCCGCCATTTCTGACCAAGACGTTTGATATAGTCGATGATCAGATTACTGATCAAGTAGTTTCATGGAACAGAGAAGGAACCAGCTTTGTGGTTTGGGATCCTATTTCTTTCTCCTCTACCTTACTCCCTCGGTACTTCAAACATGGAAATTTCTCCAGCTTCGTCCGGCAGCTCAATACTTACGGCTTTAGAAAGATAGACCCAGATAGATGGGCGTTTGCTAACGAAGGGTTTCTCAGGGGACAAAAGCATCTTCTGAAGAACATTCGTAGAAGGCGACCTCCATATCAATCTCTCCCTACCCTACAAATTCTGGGTTCTTGCATAGAAGGTGGACAGTTTGGAGTAGATGAAGAAGTTAATGGCCTGCGAAGAAACAAACAAGAACTGATAAACGAGCTGGTCAAACTTAGACAGGAGCAGCAAAACACCAGAGCTTATCTTCAATCGATGGAACAGAAGCTGCAAGGCACGGAGATGAAGCAGAAGCAGATGATAAATTTCCTAGCCAGAGCTATGCGGAATCCGGCATTTGTCAAACAACTTCTGCAACAGAAGGAAAAGAAAAAGGAGCTTTTGGAACCCATGAATAAGAAAAGAGGCAGACCTATTGAACAAGGATCCAGCAGTAGAGGTGAAACGTCGGGTTCAGTTAAGAACGAGCCGGTTGAGTTTGGGTTCGAAGTGTCGGAGCTGGAAGCACTTGCTTTGGAAATGCAAGGTTTTAGTAGAGGAAGGCGGCGGCCGGACGACGGCGAGGAGGAGCTTCTGGTCCAAGAAGGTACAGATAAGGTGCTCGACGATGTGTTCTGGGAAGAACTGGTGAACGCCCGATTGGAACAGGAGCTGGATGGTGACGATGGAGAAGGAGATGAAGACGATGTCAATGTCTTGGCCAATCGATTAGGTTACTTAGGTTCTAGCGCAAAGTAG 1047 47.76 MDPYYPVKEECPGSSSAEMGGSAGSPPLPMEGLNDAGPPPFLTKTFDIVDDQITDQVVSWNREGTSFVVWDPISFSSTLLPRYFKHGNFSSFVRQLNTYGFRKIDPDRWAFANEGFLRGQKHLLKNIRRRRPPYQSLPTLQILGSCIEGGQFGVDEEVNGLRRNKQELINELVKLRQEQQNTRAYLQSMEQKLQGTEMKQKQMINFLARAMRNPAFVKQLLQQKEKKKELLEPMNKKRGRPIEQGSSSRGETSGSVKNEPVEFGFEVSELEALALEMQGFSRGRRRPDDGEEELLVQEGTDKVLDDVFWEELVNARLEQELDGDDGEGDEDDVNVLANRLGYLGSSAK 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15890021 15892030 - Bpe019953.1 Bpe06g00451 105389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00451 348 Pfam HSF-type DNA-binding 41 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe06g00451 348 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-7A 26 327 - -
Bpe06g00451 348 Coils Coil 158 192 - -
Bpe06g00451 348 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 26 327 IPR027725 -
Bpe06g00451 348 MobiDBLite consensus disorder prediction 1 36 - -
Bpe06g00451 348 SUPERFAMILY Winged helix DNA-binding domain 37 130 IPR036390 -
Bpe06g00451 348 MobiDBLite consensus disorder prediction 228 244 - -
Bpe06g00451 348 ProSitePatterns HSF-type DNA-binding domain signature. 80 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe06g00451 348 MobiDBLite consensus disorder prediction 228 259 - -
Bpe06g00451 348 Gene3D - 34 131 IPR036388 -
Bpe06g00451 348 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe06g00451 348 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe06g00451 348 PRINTS Heat shock factor (HSF) domain signature 92 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe06g00451 348 SMART hsfneu3 37 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00451 K09419 HSFF; heat shock transcription factor, other eukaryote - zju:107425896 421.779
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00882 Bpe-Chr5:21960206 Bpe06g00451 Bpe-Chr6:15890021 1.54E-79 dispersed
Bpe06g00451 Bpe-Chr6:15890021 Bpe14g00264 Bpe-Chr14:2729979 7.50E-77 dispersed
Bpe07g00947 Bpe-Chr7:15302916 Bpe06g00451 Bpe-Chr6:15890021 5.00E-39 dispersed
Bpe06g00451 Bpe-Chr6:15890021 Bpe05g00521 Bpe-Chr5:19390537 1.44E-74 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe06g00451 . 38 238 HSF AT4G17750 53.7 1.7e-56 217.2
Bpe14g00264 . 39 225 HSF AT4G17750 54.7 1.3e-53 207.6
Bpe14g00850 . 13 211 HSF AT4G17750 52.3 8.5e-53 204.9
Bpe02g00432 BCT,CCT 20 118 HSF AT4G17750 71.7 1.6e-38 157.5
Bpe05g00026 CCT 14 117 HSF AT4G17750 67.6 2.2e-37 153.7
Bpe04g00177 BCT,CCT 21 118 HSF AT4G17750 68.4 5.0e-37 152.5
Bpe05g00633 . 20 115 HSF AT4G17750 70.8 6.5e-37 152.1
Bpe07g00232 . 22 325 HSF AT5G16820 64.1 2.0e-91 333.2
Bpe05g00521 . 19 320 HSF AT5G16820 63.9 5.9e-91 331.6
Bpe06g00451 . 39 244 HSF AT5G16820 54.0 9.4e-57 218.0
Bpe14g00850 . 15 210 HSF AT5G16820 53.1 1.3e-53 207.6
Bpe14g00264 . 40 225 HSF AT5G16820 52.9 2.0e-51 200.3
Bpe05g00882 . 37 235 HSF AT5G16820 51.9 3.6e-48 189.5
Bpe07g00232 . 24 508 HSF AT1G32330 52.3 4.6e-112 401.7
Bpe05g00521 . 21 504 HSF AT1G32330 50.5 2.6e-107 386.0
Bpe14g00850 . 10 190 HSF AT1G32330 51.8 3.6e-48 189.5
Bpe02g00432 BCT,CCT 18 117 HSF AT1G32330 70.0 7.5e-38 155.2
Bpe04g00177 BCT,CCT 19 118 HSF AT1G32330 67.0 8.3e-37 151.8
Bpe05g00026 CCT 20 116 HSF AT1G32330 70.4 2.4e-36 150.2
Bpe06g00451 . 39 243 HSF AT3G02990 53.8 2.2e-58 223.4
Bpe14g00850 . 15 213 HSF AT3G02990 52.6 9.5e-54 208.0
Bpe14g00264 . 40 226 HSF AT3G02990 51.8 3.1e-52 203.0
Bpe02g00432 BCT,CCT 8 133 HSF AT3G02990 58.9 5.6e-38 155.6
Bpe02g01074 . 7 395 HSF AT4G18880 50.4 1.5e-95 346.7
Bpe14g00850 . 7 483 HSF AT4G13980 52.6 8.7e-124 440.7
Bpe14g00264 . 32 232 HSF AT3G22830 54.3 2.0e-60 229.9
Bpe05g00521 . 10 232 HSF AT3G22830 55.7 5.0e-59 225.3
Bpe07g00232 . 28 236 HSF AT3G22830 55.1 1.6e-57 220.3
Bpe06g00451 . 26 314 HSF AT3G51910 52.2 1.1e-67 253.4
Bpe13g01250 CCT 1 208 HSF AT3G51910 51.2 6.3e-50 194.5
Bpe14g00264 . 32 232 HSF AT3G51910 52.0 9.1e-49 190.7
Bpe05g00521 . 21 218 HSF AT3G51910 51.7 2.5e-46 182.6
Bpe13g01250 CCT 4 210 HSF AT5G54070 51.9 8.2e-52 201.1
Bpe02g02194 CCT 4 210 HSF AT5G54070 51.0 1.3e-49 193.7
Bpe07g00947 . 14 139 HSF AT4G36990 57.1 5.2e-39 158.3
Bpe05g00633 . 16 316 HSF AT4G11660 52.9 2.1e-80 296.2
Bpe02g00432 BCT,CCT 16 119 HSF AT4G11660 76.0 1.3e-45 180.6
Bpe05g00026 CCT 16 121 HSF AT4G11660 72.9 1.2e-43 174.1
Bpe04g00177 BCT,CCT 17 116 HSF AT4G11660 73.0 1.8e-42 170.2
Bpe02g00432 BCT,CCT 1 343 HSF AT1G46264 54.6 1.1e-91 333.6
Bpe04g00177 BCT,CCT 2 334 HSF AT1G46264 52.6 9.8e-88 320.5
Bpe05g00026 CCT 1 340 HSF AT1G46264 52.7 1.1e-86 317.0
Bpe07g00947 . 17 115 HSF AT1G46264 72.7 8.1e-42 167.9
Bpe14g00850 . 5 106 HSF AT1G46264 67.6 2.4e-38 156.4
Bpe05g00882 . 33 131 HSF AT1G46264 69.7 2.1e-37 153.3
Bpe13g01307 . 9 182 HSF AT3G24520 64.4 6.9e-59 224.6
Bpe08g00470 . 7 167 HSF AT3G24520 60.2 3.4e-50 195.7
Bpe06g00451 . 38 238 HSF AT4G17750 53.7 1.7e-56 217.2
Bpe14g00264 . 39 225 HSF AT4G17750 54.7 1.3e-53 207.6
Bpe14g00850 . 13 211 HSF AT4G17750 52.3 8.5e-53 204.9
Bpe02g00432 BCT,CCT 20 118 HSF AT4G17750 71.7 1.6e-38 157.5
Bpe05g00026 CCT 14 117 HSF AT4G17750 67.6 2.2e-37 153.7
Bpe04g00177 BCT,CCT 21 118 HSF AT4G17750 68.4 5.0e-37 152.5
Bpe05g00633 . 20 115 HSF AT4G17750 70.8 6.5e-37 152.1
Bpe07g00232 . 22 325 HSF AT5G16820 64.1 2.0e-91 333.2
Bpe05g00521 . 19 320 HSF AT5G16820 63.9 5.9e-91 331.6
Bpe06g00451 . 39 244 HSF AT5G16820 54.0 9.4e-57 218.0
Bpe14g00850 . 15 210 HSF AT5G16820 53.1 1.3e-53 207.6
Bpe14g00264 . 40 225 HSF AT5G16820 52.9 2.0e-51 200.3
Bpe05g00882 . 37 235 HSF AT5G16820 51.9 3.6e-48 189.5
Bpe07g00232 . 24 508 HSF AT1G32330 52.3 4.6e-112 401.7
Bpe05g00521 . 21 504 HSF AT1G32330 50.5 2.6e-107 386.0
Bpe14g00850 . 10 190 HSF AT1G32330 51.8 3.6e-48 189.5
Bpe02g00432 BCT,CCT 18 117 HSF AT1G32330 70.0 7.5e-38 155.2
Bpe04g00177 BCT,CCT 19 118 HSF AT1G32330 67.0 8.3e-37 151.8
Bpe05g00026 CCT 20 116 HSF AT1G32330 70.4 2.4e-36 150.2
Bpe06g00451 . 39 243 HSF AT3G02990 53.8 2.2e-58 223.4
Bpe14g00850 . 15 213 HSF AT3G02990 52.6 9.5e-54 208.0
Bpe14g00264 . 40 226 HSF AT3G02990 51.8 3.1e-52 203.0
Bpe02g00432 BCT,CCT 8 133 HSF AT3G02990 58.9 5.6e-38 155.6
Bpe02g01074 . 7 395 HSF AT4G18880 50.4 1.5e-95 346.7
Bpe14g00850 . 7 483 HSF AT4G13980 52.6 8.7e-124 440.7
Bpe14g00264 . 32 232 HSF AT3G22830 54.3 2.0e-60 229.9
Bpe05g00521 . 10 232 HSF AT3G22830 55.7 5.0e-59 225.3
Bpe07g00232 . 28 236 HSF AT3G22830 55.1 1.6e-57 220.3
Bpe06g00451 . 26 314 HSF AT3G51910 52.2 1.1e-67 253.4
Bpe13g01250 CCT 1 208 HSF AT3G51910 51.2 6.3e-50 194.5
Bpe14g00264 . 32 232 HSF AT3G51910 52.0 9.1e-49 190.7
Bpe05g00521 . 21 218 HSF AT3G51910 51.7 2.5e-46 182.6
Bpe13g01250 CCT 4 210 HSF AT5G54070 51.9 8.2e-52 201.1
Bpe02g02194 CCT 4 210 HSF AT5G54070 51.0 1.3e-49 193.7
Bpe07g00947 . 14 139 HSF AT4G36990 57.1 5.2e-39 158.3
Bpe05g00633 . 16 316 HSF AT4G11660 52.9 2.1e-80 296.2
Bpe02g00432 BCT,CCT 16 119 HSF AT4G11660 76.0 1.3e-45 180.6
Bpe05g00026 CCT 16 121 HSF AT4G11660 72.9 1.2e-43 174.1
Bpe04g00177 BCT,CCT 17 116 HSF AT4G11660 73.0 1.8e-42 170.2
Bpe02g00432 BCT,CCT 1 343 HSF AT1G46264 54.6 1.1e-91 333.6
Bpe04g00177 BCT,CCT 2 334 HSF AT1G46264 52.6 9.8e-88 320.5
Bpe05g00026 CCT 1 340 HSF AT1G46264 52.7 1.1e-86 317.0
Bpe07g00947 . 17 115 HSF AT1G46264 72.7 8.1e-42 167.9
Bpe14g00850 . 5 106 HSF AT1G46264 67.6 2.4e-38 156.4
Bpe05g00882 . 33 131 HSF AT1G46264 69.7 2.1e-37 153.3
Bpe13g01307 . 9 182 HSF AT3G24520 64.4 6.9e-59 224.6
Bpe08g00470 . 7 167 HSF AT3G24520 60.2 3.4e-50 195.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001412 1 3 2 0 1 2 2 2 2 2 2 2 2 3 2 2 2 4 2 2 2 2 2 2 2 2 2 12 6 0 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21569 PF00447 HSF_DNA-bind 2.10E-31 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00451 Bpe_Chr06 FPKM 9.646799 8.555596 1.567859 2.424087 0.692924 0.249728 0.277735 1.254657 1.572018 1.422212