Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00548 ATGGCGAAAATGGGAGTGTTCGATTCTGATCCGGCTTTGGTTGCGAAGACCACCGAACTGAAGCGAGAGTTGCAGAGACTGGTTAGTTCTATAATTGATGATGACGATTACAGTGCCGAGGCTGTCGATCAGGCGATGGAGACGCTCTGTGCTTTGAAGCAATTGAAGCTCAGAAAGAGGTCCATGTCTTTGAATTCCGGCCCGAATCTTTGTTGTCCTGATGAATTTCGATGCCCTCTTTCTAAGGATTTGATGAGGGATCCTGTAATTCTGGCCTCGGGTCAGACTTTTGACAGGCCCTTCATCCAGCAATGGTTAAAGGCAGGGAACCGGATTTGCCCCTGTACTCAACAAGTTCTTTCACACACAATCCTTGTTCCTAACCATTTGGTTAAGGAAATGATATCTCAATGGTGCATGACCCGAGGAATTGAGTTTTCAGAGCCAGTTCATTATCTTGGCGAGGAAAGGGTGGTGACGGATTCAGATCGCAATCATTTACTTTGTTTGCTTGAGAAAATGTCTTCAACAATTTCTGATAAAAAAGAAGCGGCCAAAGAACTTCGACTACTGACGAAGAGAATGTCCTCAATCCGGGTGCTTTTTGGCGAGTATGAAGATGCAATTCTATTGTTACTCAGTCCACTATCTGAAGGCACGTCTCGAGAGGACTTTTCTGCCGATCTTCAAGAAGATATTATCACCACTCTTTTAAATCTGTCAATCCATGATAATAATAAGAAGCTTGTTGCTGAAACCCCAACTGCAATCCCTGTACTTATTGAAGCATTGAGGACAGGAACCATAGCAACAAGAAGTAATGCAGCCGCTGCCCTTTTCACCTTGTCAGCTCTTGACTCAAACAAGGCTCTAATAGGAAAATCTGGTACTTTGAAACCTCTCATTGAGCTTTTGGAAGAAGGTGATTCATTATCCATGAAAGATGTAGCTTCGGCCATTTTTAATCTGTGCATCCTCCACGAGAACAAGGCAAGGGCTGTCAGGGATGGGGCTGTCAGGGTTATTTTGAAGAAGATCACAAACCGCTTGAATGTGGATGAGTTGATGGCGATTCTAGCAATGCTTTCAACCCATCAACAGGCTGTGGAGGAAATGAAAGATCTTGGAGCCGTTGCTGTCTTGCTCAGCACTATGAGAGACAGTAGTTGTTCTCGAAACAAGGAAAATTGTGTTGCGATTCTTCATGCAATCTGTTTTTATGATCGAACGAAGTGGAAAGAGATCAGGGACGAGGAAAATATTTATGGAACAATCTCAGAGCTAGCTCGAAATGGAACGCCAAGGGCCAAGAGAAAGGCTGCCGGCATACTTGAGAGATTGAATAGGGCTGTTAATATTACACACACTGCATAG 1374 44.03 MAKMGVFDSDPALVAKTTELKRELQRLVSSIIDDDDYSAEAVDQAMETLCALKQLKLRKRSMSLNSGPNLCCPDEFRCPLSKDLMRDPVILASGQTFDRPFIQQWLKAGNRICPCTQQVLSHTILVPNHLVKEMISQWCMTRGIEFSEPVHYLGEERVVTDSDRNHLLCLLEKMSSTISDKKEAAKELRLLTKRMSSIRVLFGEYEDAILLLLSPLSEGTSREDFSADLQEDIITTLLNLSIHDNNKKLVAETPTAIPVLIEALRTGTIATRSNAAAALFTLSALDSNKALIGKSGTLKPLIELLEEGDSLSMKDVASAIFNLCILHENKARAVRDGAVRVILKKITNRLNVDELMAILAMLSTHQQAVEEMKDLGAVAVLLSTMRDSSCSRNKENCVAILHAICFYDRTKWKEIRDEENIYGTISELARNGTPRAKRKAAGILERLNRAVNITHTA 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 16517917 16519891 - Bpe020049.1 Bpe06g00548 105486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00548 457 Gene3D - 166 454 IPR011989 -
Bpe06g00548 457 Pfam U-box domain 73 142 IPR003613 GO:0004842|GO:0016567
Bpe06g00548 457 SUPERFAMILY RING/U-box 72 148 - -
Bpe06g00548 457 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
Bpe06g00548 457 SUPERFAMILY ARM repeat 166 447 IPR016024 -
Bpe06g00548 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
Bpe06g00548 457 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 455 - -
Bpe06g00548 457 PANTHER U BOX DOMAIN-CONTAINING 6 455 - -
Bpe06g00548 457 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Bpe06g00548 457 CDD RING-Ubox_PUB 76 118 IPR045210 -
Bpe06g00548 457 SMART arm_5 243 284 IPR000225 GO:0005515
Bpe06g00548 457 SMART arm_5 365 406 IPR000225 GO:0005515
Bpe06g00548 457 SMART arm_5 285 325 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00548 Bpe-Chr6:16517917 Bpe11g01291 Bpe-Chr11:9653012 2.68E-106 dispersed
Bpe09g00300 Bpe-Chr9:2415815 Bpe06g00548 Bpe-Chr6:16517917 0 transposed
Bpe10g00477 Bpe-Chr10:12036931 Bpe06g00548 Bpe-Chr6:16517917 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00548 - - zju:107426793 660.218