Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00667 ATGGAGAAAAAAAAGTATCCGATCGGACCAGAGCATTATACTCTGTATGAGGAGGTGGGCCAAGGTGCGAGTGCTTCAGTTCACCGTGCTTTTTGTAAACCTTTGGAAGAGATCGTAGCCATAAAGATCCTAGATTTTGAACGCGACAATATCGATTTGAACAATATATCTCGAGAAGCTCAAATAATGATCCTGGTTGAGCATCCTAATGTCCTCAAATCACACTGCTCTTTTGTTAGCGACCATAATTTGTGGGTCGTCATGCCATTCATGTCTGGTGGATCATGTCTCCATATATTGAAAGCTGCATATCCAGATGGTTTTGAAGAAGTAGTTATAGCAACAGTATTGCGCGAGGCATTGAAGGGTTTAGAGTATCTTCATCATCATGGGCACATACATCGAGATGTAAAAGCTGGAAATATCCTTATCGATACACGAGGTGCGATCAAGTTGGGTGATTTTGGAGTGTCTGCGTGCCTTTTTGATTCAGGTGATAGGCAACGTGTGAGGAATACATTTGTTGGGACACCTTGCTGGATGGCACCTGAAGTTATGGAACAATTGCATGGCTACGACTTAAAAGCTGATATATGGTCTTTTGGCATAACTGCATTAGAACTTGCTCATGGCCATGCTCCTTTCTCAAAGTATCCTCCAATGAAGGTATTGTTGATGACCTTGCAAAATGCTCCTCCTGGTCTTGATTACGAGAGGGATAAAAAATTCTCCAAATCTTTTAAGCAAATGATTGCAAGTTGTTTGGTGAAAGATCCATCTAAGCGTCCCTCTGCACAGAAGTTGTTGAAACATTCTTTTTTCAAACAAGCTCGATCATATGAATATATAGAGCGCTCTTTGTTAGAGGGCCTGCCTGCTCTTGGTGATCGTATGGAAGCCCTTAAGAGAAAGGAAGAAGATATGCTTGCCCAAAAGAAAATTCCAGATGGGCAAAAGGAGGAAATTTCACAGAATGAATATAAACGAGGAATAAGTGGATGGAATTTCAATCTTGAAGATGTGAAGGCACAAGCATCATTGATCCAGGATGTTGATGATCCCATTTCTGATAATAATCTAGGTGGGATCTCTAATTCTTTATCCGCATATGATGGTCAAGAAAAGCAATCACAAGGTTCTTCTGAAGTTACAGATGTGGTAATGTCTACTATATTCATGATTATAGGTGCCTTTCTTCTAAAATTTTTCCGTTAA 1215 40.25 MEKKKYPIGPEHYTLYEEVGQGASASVHRAFCKPLEEIVAIKILDFERDNIDLNNISREAQIMILVEHPNVLKSHCSFVSDHNLWVVMPFMSGGSCLHILKAAYPDGFEEVVIATVLREALKGLEYLHHHGHIHRDVKAGNILIDTRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLHGYDLKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSAQKLLKHSFFKQARSYEYIERSLLEGLPALGDRMEALKRKEEDMLAQKKIPDGQKEEISQNEYKRGISGWNFNLEDVKAQASLIQDVDDPISDNNLGGISNSLSAYDGQEKQSQGSSEVTDVVMSTIFMIIGAFLLKFFR 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17359297 17363201 + Bpe020153.1 Bpe06g00667 105605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00667 404 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe06g00667 404 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe06g00667 404 Pfam Protein kinase domain 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe06g00667 404 SUPERFAMILY Protein kinase-like (PK-like) 11 286 IPR011009 -
Bpe06g00667 404 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Bpe06g00667 404 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 4 386 - -
Bpe06g00667 404 CDD STKc_OSR1_SPAK 11 274 - -
Bpe06g00667 404 PANTHER SERINE/THREONINE-PROTEIN KINASE OSR1-LIKE 4 386 - -
Bpe06g00667 404 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Bpe06g00667 404 Gene3D Transferase(Phosphotransferase) domain 1 94 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00667 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - jre:108985864 701.434
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe06g00667 Bpe10g00590 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00667 Bpe-Chr6:17359297 Bpe14g00247 Bpe-Chr14:2619583 0 dispersed
Bpe10g00590 Bpe-Chr10:12838124 Bpe06g00667 Bpe-Chr6:17359297 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g927 Blo05g00167 . Bda04g00785 . Bpe06g00667 Bpe10g00590 . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag1129 . . . . . . . Blo07g00676 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00463 . 1 699 MAP Kinase Kinase Kinase Kinase AT1G53165 61.5 5.6e-220 760.8
Bpe02g02311 . 223 488 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.9e-67 253.4
Bpe11g00463 . 1 696 MAP Kinase Kinase Kinase Kinase AT3G15220 64.4 3.9e-237 817.8
Bpe02g02311 . 223 488 MAP Kinase Kinase Kinase Kinase AT3G15220 50.2 8.4e-67 251.9
Bpe02g02311 . 9 792 MAP Kinase Kinase Kinase Kinase AT1G69220 56.2 6.3e-223 770.8
Bpe11g00463 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.8 1.8e-68 257.7
Bpe14g00247 BCT 1 589 MAP Kinase Kinase Kinase Kinase AT5G14720 67.0 1.9e-225 778.9
Bpe02g01494 BCT 1 595 MAP Kinase Kinase Kinase Kinase AT5G14720 64.3 1.1e-215 746.5
Bpe10g00590 BCT 3 352 MAP Kinase Kinase Kinase Kinase AT5G14720 69.7 7.8e-150 527.7
Bpe06g00667 BCT 3 352 MAP Kinase Kinase Kinase Kinase AT5G14720 69.7 3.9e-149 525.4
Bpe05g00502 . 5 705 MAP Kinase Kinase Kinase Kinase AT4G24100 65.7 1.2e-249 859.4
Bpe14g00247 BCT 6 355 MAP Kinase Kinase Kinase Kinase AT4G24100 66.0 1.8e-136 483.4
Bpe02g01494 BCT 9 355 MAP Kinase Kinase Kinase Kinase AT4G24100 66.6 2.6e-135 479.6
Bpe10g00590 BCT 2 353 MAP Kinase Kinase Kinase Kinase AT4G24100 65.1 9.9e-135 477.6
Bpe06g00667 BCT 2 353 MAP Kinase Kinase Kinase Kinase AT4G24100 64.2 1.9e-133 473.4
Bpe05g00502 . 6 706 MAP Kinase Kinase Kinase Kinase AT4G10730 65.9 1.5e-249 859.0
Bpe14g00247 BCT 7 376 MAP Kinase Kinase Kinase Kinase AT4G10730 64.3 1.7e-139 493.4
Bpe10g00590 BCT 4 360 MAP Kinase Kinase Kinase Kinase AT4G10730 66.1 6.3e-139 491.5
Bpe06g00667 BCT 4 358 MAP Kinase Kinase Kinase Kinase AT4G10730 65.6 1.2e-137 487.3
Bpe02g01494 BCT 9 356 MAP Kinase Kinase Kinase Kinase AT4G10730 67.5 2.7e-137 486.1
Bpe14g00247 BCT 5 351 MAP Kinase Kinase Kinase Kinase AT1G70430 71.8 3.6e-146 515.4
Bpe02g01494 BCT 1 420 MAP Kinase Kinase Kinase Kinase AT1G70430 61.8 3.9e-145 511.9
Bpe06g00667 BCT 4 404 MAP Kinase Kinase Kinase Kinase AT1G70430 55.3 1.1e-128 457.2
Bpe10g00590 BCT 4 364 MAP Kinase Kinase Kinase Kinase AT1G70430 59.3 6.3e-127 451.4
Bpe05g00502 . 2 356 MAP Kinase Kinase Kinase Kinase AT1G70430 59.7 5.2e-121 431.8
Bpe06g00667 BCT 1 378 MAP Kinase Kinase Kinase Kinase AT1G79640 83.3 3.9e-186 648.3
Bpe10g00590 BCT 1 382 MAP Kinase Kinase Kinase Kinase AT1G79640 80.6 7.6e-182 634.0
Bpe14g00247 BCT 4 360 MAP Kinase Kinase Kinase Kinase AT1G79640 69.2 4.5e-150 528.5
Bpe02g01494 BCT 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 57.4 6.9e-100 361.3
Bpe14g00247 BCT 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 56.5 2.9e-98 355.9
Bpe10g00590 BCT 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.6 2.3e-87 319.7
Bpe06g00667 BCT 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.4 1.3e-85 313.9
Bpe05g00502 . 14 303 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 3.3e-78 289.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63399 PF00069 Pkinase 1.30E-59 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe06g00667 Bpe_Chr06 FPKM 14.241773 15.174664 26.125242 25.817337 124.38578 131.040726 122.477615 18.109215 18.113853 17.618542