Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00683 ATGGCCAGACCTCAGCAGAGATTCCGAGGCGTCCGCCAACGCCACTGGGGTTCTTGGGTCTCCGAAATCCGACACCCTTTACTGAAGACGAGAATTTGGCTAGGAACGTTCGAAACGGCCGAGGACGCCGCGAAAGCTTACGACGAAGCGGCGAGGCTAATGTGCGGGCCGAAAGCTCGAACCAATTTCTCGTATAATCAGAACGAGCAACAGTCGTCTTCCTCGAAGCTTCTGTCTGCAACTCTAACTTCAAAGCTTCAAAAATGCTACATGGCCTCCCTTCAAATGGCCAAAAAACAACCTCCCAAACAGCCTCAACAAACCCACTATTCGTACGGCTCGACTCCGAGCTGCATTCCCCAAAATAGCGCCGGAACGCACATTCAGGCGCCGGAGAAGTCGTGGATGGAAGCCGGTCAGCAGTTCCAGCATCTTGAAGATGATGATATCGAGCAGATGATCCAGGAACTGCTTGATCTGGGATCGTTTGAGCTTCGATCTGCCGTTTCTTCTTAA 516 52.13 MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAAKAYDEAARLMCGPKARTNFSYNQNEQQSSSSKLLSATLTSKLQKCYMASLQMAKKQPPKQPQQTHYSYGSTPSCIPQNSAGTHIQAPEKSWMEAGQQFQHLEDDDIEQMIQELLDLGSFELRSAVSS 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17434406 17435031 + Bpe020167.1 Bpe06g00683 105621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00683 171 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Bpe06g00683 171 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 167 - -
Bpe06g00683 171 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Bpe06g00683 171 PANTHER ETHYLENE RESPONSE FACTOR 1 167 - -
Bpe06g00683 171 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Bpe06g00683 171 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Bpe06g00683 171 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Bpe06g00683 171 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Bpe06g00683 171 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Bpe06g00683 171 CDD AP2 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00683 Bpe-Chr6:17434406 Bpe13g01056 Bpe-Chr13:16205097 1.73E-32 dispersed
Bpe02g01256 Bpe-Chr2:16047004 Bpe06g00683 Bpe-Chr6:17434406 1.87E-52 wgd
Bpe06g00683 Bpe-Chr6:17434406 Bpe09g00436 Bpe-Chr9:11173869 4.55E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21584 PF00847 AP2 2.80E-11 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00683 - - cit:102619724 198.749