Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe06g00780 ATGAAGGGTTTGCAGTTTCAGCAAGTTTTGGAGGAGAACGTGTCTAATTTGACTTCCGCTTCAGGTGATCAAGCAAGTGTATCGTCTGGTCAAAGAAATCAGCAATACTTGACTCAACAGATTCCAAATCTTCAACCTTCAGCGAAGAAGAAGAGAAATCTTCCTGGCAATCCAGACCCAGGAGCAGAAGTGATAGCTTTGTCACCCAAGACGCTAATGGCGACAAACAGATTCATCTGCGAGATCTGCAACAAAGGGTTTCAGAGAGATCAAAACCTGCAACTTCACAGGAGAGGGCATAATCTGCCATGGAAACTGAAGCAAAAATCAAGCAAAGAGATGAAGAAGAAAGTTTACATTTGCCCAGAAACAAGCTGCGTCCACCATGACCCATCAAGAGCTCTGGGCGACCTAACTGGAATCAAGAAACACTTCTGCAGAAAACATGGCGAAAAGAAGTGGAAATGTGACAAATGCTCGAAGAAATATGCTGTTCAATCTGACTGGAAGGCTCATTCCAAAACCTGTGGAACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCCAGGCGGGATAGTTTCATCACTCACAGGGCCTTCTGCGACGCTTTAGCAGAAGAAAGTAGTAGAACTAATATTGCAGCCAATTCACTTCTCTCCTCTCGTCAATCTGTTTCTTCTTCCTCCATCTCTCTCTTACCATCTCCGCCATTGTTGAGTTCTCAGAACCCACATCCATTTTCTCTCAGAAACGAGCATCATCCTCTCTCTCTCAGACCAGACTGTCCTCCTTGGCTCCCCTCTCTTGCCCCACCTCCAGTTGATTTCCAGTCACCGCCGTCCATCTTCTCCTCGCCCTCAACCGGTGATTTTACGCCAACCCACCAAGATTTATCCCCCCTTCAAACTCCTCCACAGTCTAACCCTAATCTGGGTCCCACTCCTCCTCTTTACCAGTCGCCTCTTTCCCCTCACATATCAGCCACTGCATTGCTTCAGAAGGCAGCTCGGATGGGTGCCATCGTGAGCTCGAAAACGGCGTCTTTATCTACTCCGGCGACGATGACAAATCCGAACCAGATTTTGGAGAATTCCGCCATTAATACAACCAGTAGCTTTGGCTTCAACCTTTCTGCAAGCGAAGGTTTTCCTCATTCGTTACCAAGTACTTACGGGAATTCTCTAACCTCTACATCTGGGTTTGAAGAATCTTGTTTCGAGGAAGCATTTGGTGGGATTATGACGCAAAAGAAAGCTGTGAATATGAACGACATTATCATGCCAAAAACAAGCTCTGCAATGTCATATATGAGCAGCAAAAACGAAGGAGGCGGAAATGGCGAAAGTTTGACCAGAGACTTCTTGGGTCTGAGAGCTTTCTCCCACAGCGATATTCTTAATATTACGGGCTTTGGAAACTCCATCAACACTTTGCAGAATCGCCAGAAGCCATGGCAAGGCTAG 1467 46.15 MKGLQFQQVLEENVSNLTSASGDQASVSSGQRNQQYLTQQIPNLQPSAKKKRNLPGNPDPGAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQKSSKEMKKKVYICPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESSRTNIAANSLLSSRQSVSSSSISLLPSPPLLSSQNPHPFSLRNEHHPLSLRPDCPPWLPSLAPPPVDFQSPPSIFSSPSTGDFTPTHQDLSPLQTPPQSNPNLGPTPPLYQSPLSPHISATALLQKAARMGAIVSSKTASLSTPATMTNPNQILENSAINTTSSFGFNLSASEGFPHSLPSTYGNSLTSTSGFEESCFEEAFGGIMTQKKAVNMNDIIMPKTSSAMSYMSSKNEGGGNGESLTRDFLGLRAFSHSDILNITGFGNSINTLQNRQKPWQG 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18046584 18048479 - Bpe020262.1 Bpe06g00780 105718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe06g00780 488 SMART c2h2final6 154 174 IPR013087 -
Bpe06g00780 488 SMART c2h2final6 78 100 IPR013087 -
Bpe06g00780 488 SMART c2h2final6 119 149 IPR013087 -
Bpe06g00780 488 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 16 472 - -
Bpe06g00780 488 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Bpe06g00780 488 MobiDBLite consensus disorder prediction 281 306 - -
Bpe06g00780 488 Pfam Zinc-finger double-stranded RNA-binding 78 100 IPR022755 -
Bpe06g00780 488 Gene3D Classic Zinc Finger 58 129 - -
Bpe06g00780 488 MobiDBLite consensus disorder prediction 41 62 - -
Bpe06g00780 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Bpe06g00780 488 MobiDBLite consensus disorder prediction 277 316 - -
Bpe06g00780 488 SUPERFAMILY beta-beta-alpha zinc fingers 77 174 IPR036236 -
Bpe06g00780 488 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 472 - -
Bpe06g00780 488 Gene3D Classic Zinc Finger 132 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00051 Bpe-Chr6:611594 Bpe06g00780 Bpe-Chr6:18046584 7.63E-116 dispersed
Bpe06g00780 Bpe-Chr6:18046584 Bpe10g00110 Bpe-Chr10:1913481 9.74E-118 dispersed
Bpe04g01583 Bpe-Chr4:22108697 Bpe06g00780 Bpe-Chr6:18046584 3.44E-109 transposed
Bpe06g00780 Bpe-Chr6:18046584 Bpe09g00021 Bpe-Chr9:171971 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21589 PF12171 zf-C2H2_jaz 7.10E-05 CL0361 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe06g00780 K25870 - jre:109011738 545.428