Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe06g00780 | ATGAAGGGTTTGCAGTTTCAGCAAGTTTTGGAGGAGAACGTGTCTAATTTGACTTCCGCTTCAGGTGATCAAGCAAGTGTATCGTCTGGTCAAAGAAATCAGCAATACTTGACTCAACAGATTCCAAATCTTCAACCTTCAGCGAAGAAGAAGAGAAATCTTCCTGGCAATCCAGACCCAGGAGCAGAAGTGATAGCTTTGTCACCCAAGACGCTAATGGCGACAAACAGATTCATCTGCGAGATCTGCAACAAAGGGTTTCAGAGAGATCAAAACCTGCAACTTCACAGGAGAGGGCATAATCTGCCATGGAAACTGAAGCAAAAATCAAGCAAAGAGATGAAGAAGAAAGTTTACATTTGCCCAGAAACAAGCTGCGTCCACCATGACCCATCAAGAGCTCTGGGCGACCTAACTGGAATCAAGAAACACTTCTGCAGAAAACATGGCGAAAAGAAGTGGAAATGTGACAAATGCTCGAAGAAATATGCTGTTCAATCTGACTGGAAGGCTCATTCCAAAACCTGTGGAACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCCAGGCGGGATAGTTTCATCACTCACAGGGCCTTCTGCGACGCTTTAGCAGAAGAAAGTAGTAGAACTAATATTGCAGCCAATTCACTTCTCTCCTCTCGTCAATCTGTTTCTTCTTCCTCCATCTCTCTCTTACCATCTCCGCCATTGTTGAGTTCTCAGAACCCACATCCATTTTCTCTCAGAAACGAGCATCATCCTCTCTCTCTCAGACCAGACTGTCCTCCTTGGCTCCCCTCTCTTGCCCCACCTCCAGTTGATTTCCAGTCACCGCCGTCCATCTTCTCCTCGCCCTCAACCGGTGATTTTACGCCAACCCACCAAGATTTATCCCCCCTTCAAACTCCTCCACAGTCTAACCCTAATCTGGGTCCCACTCCTCCTCTTTACCAGTCGCCTCTTTCCCCTCACATATCAGCCACTGCATTGCTTCAGAAGGCAGCTCGGATGGGTGCCATCGTGAGCTCGAAAACGGCGTCTTTATCTACTCCGGCGACGATGACAAATCCGAACCAGATTTTGGAGAATTCCGCCATTAATACAACCAGTAGCTTTGGCTTCAACCTTTCTGCAAGCGAAGGTTTTCCTCATTCGTTACCAAGTACTTACGGGAATTCTCTAACCTCTACATCTGGGTTTGAAGAATCTTGTTTCGAGGAAGCATTTGGTGGGATTATGACGCAAAAGAAAGCTGTGAATATGAACGACATTATCATGCCAAAAACAAGCTCTGCAATGTCATATATGAGCAGCAAAAACGAAGGAGGCGGAAATGGCGAAAGTTTGACCAGAGACTTCTTGGGTCTGAGAGCTTTCTCCCACAGCGATATTCTTAATATTACGGGCTTTGGAAACTCCATCAACACTTTGCAGAATCGCCAGAAGCCATGGCAAGGCTAG | 1467 | 46.15 | MKGLQFQQVLEENVSNLTSASGDQASVSSGQRNQQYLTQQIPNLQPSAKKKRNLPGNPDPGAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQKSSKEMKKKVYICPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESSRTNIAANSLLSSRQSVSSSSISLLPSPPLLSSQNPHPFSLRNEHHPLSLRPDCPPWLPSLAPPPVDFQSPPSIFSSPSTGDFTPTHQDLSPLQTPPQSNPNLGPTPPLYQSPLSPHISATALLQKAARMGAIVSSKTASLSTPATMTNPNQILENSAINTTSSFGFNLSASEGFPHSLPSTYGNSLTSTSGFEESCFEEAFGGIMTQKKAVNMNDIIMPKTSSAMSYMSSKNEGGGNGESLTRDFLGLRAFSHSDILNITGFGNSINTLQNRQKPWQG | 488 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 18046584 | 18048479 | - | Bpe020262.1 | Bpe06g00780 | 105718 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe06g00780 | 488 | SMART | c2h2final6 | 154 | 174 | IPR013087 | - | |
Bpe06g00780 | 488 | SMART | c2h2final6 | 78 | 100 | IPR013087 | - | |
Bpe06g00780 | 488 | SMART | c2h2final6 | 119 | 149 | IPR013087 | - | |
Bpe06g00780 | 488 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 16 | 472 | - | - | |
Bpe06g00780 | 488 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 80 | 100 | IPR013087 | - | |
Bpe06g00780 | 488 | MobiDBLite | consensus disorder prediction | 281 | 306 | - | - | |
Bpe06g00780 | 488 | Pfam | Zinc-finger double-stranded RNA-binding | 78 | 100 | IPR022755 | - | |
Bpe06g00780 | 488 | Gene3D | Classic Zinc Finger | 58 | 129 | - | - | |
Bpe06g00780 | 488 | MobiDBLite | consensus disorder prediction | 41 | 62 | - | - | |
Bpe06g00780 | 488 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 78 | 100 | IPR013087 | - | |
Bpe06g00780 | 488 | MobiDBLite | consensus disorder prediction | 277 | 316 | - | - | |
Bpe06g00780 | 488 | SUPERFAMILY | beta-beta-alpha zinc fingers | 77 | 174 | IPR036236 | - | |
Bpe06g00780 | 488 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 16 | 472 | - | - | |
Bpe06g00780 | 488 | Gene3D | Classic Zinc Finger | 132 | 212 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe06g00051 | Bpe-Chr6:611594 | Bpe06g00780 | Bpe-Chr6:18046584 | 7.63E-116 | dispersed | |
Bpe06g00780 | Bpe-Chr6:18046584 | Bpe10g00110 | Bpe-Chr10:1913481 | 9.74E-118 | dispersed | |
Bpe04g01583 | Bpe-Chr4:22108697 | Bpe06g00780 | Bpe-Chr6:18046584 | 3.44E-109 | transposed | |
Bpe06g00780 | Bpe-Chr6:18046584 | Bpe09g00021 | Bpe-Chr9:171971 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21589 | PF12171 | zf-C2H2_jaz | 7.10E-05 | CL0361 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe06g00780 | K25870 | - | jre:109011738 | 545.428 |