Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00026 ATGGGGAAGGGTCTCTTCTCTTTTCGCCTCACCAACCCCCGTCGTCGCTCTAAAACCAAGCATCACCCTCATCCCTCCCCTCCTTCCTCGCTTCCTGGCCCCACTTCCCCGCCCAACAACGCCCTCATCGCTGCCGCCGCTGCTGCTGGGGCGGCCGCAGCCAAGGGGAAGAAGAAGGCTGGCGGACCTAGGCTGTGGATGCGTTTTGACCGATGGGGCCGCTCCGAGCTGGTAGAGTGCGATAAGAGCGCCATCATCCGGCTTGCTGGAATACCTGCCCGGGATTTGAGAATCCTTGGCCCTGTTTTCTCTCAATCGTCCAATATTCTTGGCAGAGAGAAGGCCATGGTTGTTAACTTAGAGTTCATAAAGGCAATAGTTACTGCAGAAGAAGTGCTTTTACTTGAGCCCCTTCGTCAGGAGGTTCTTCCATTTGTGGATCAGCTAAGACTGCAACTTCCTCAGAAAAGTCCATCTAGGACCCACGGAACTGAAACTTTGGATGAACAAGAGAATGATGTGCATGTTTTGACAGGTAGGCAATGGTTTCCTGTCTCGGAAACAGCTGAAGCTTTGAACAGTGAGCTCCCATTTGAGTTTCAGGTTCTGGAAATTGCATTAGAGGTTGTTTGTTTATACTTAGACTCAAGGGTAGCAGAGCTTGAGAGAGGTGCATACCCTGTTCTTGATGAACTGGCTAGGAATGTCAGCACCAAAAATCTTGAACACGTGAGAAGTTTGAAAAGCAATCTTACTCGTCTACTTGCACGCGTGCAAAAGGTGAGGGATGAAATCGAACATCTATTGGATGACAATGAAGACATGGCGCATTTATATTTAACAAGGAAGTGGATGCAGAATCAACAATCCATGGCTTTGTTGGGCGGTGTAGCATCCAATAGTTTATCTGCTCCTTCCTCCCATCTTCATCGACTTAATTCTACACGGAGTGGGAGTTTGGCGACTAGCAACCATTTGGAAGATAATGATGTAGAAGATCTTGAGATGTTGCTCGAGGCATATTTTATGCAGTTGGATGGAACTCGGAACAAGATACTATCTGTTCGGGAGTACATAGATGACACAGAGGACTATGTGAACATTCAACTGGACAACCAGCGAAATGAACTTATTCAACTTCAGTTGATATTGACCATCGCATCATTTGCCATAGCAATGGAAACTTGGATATCTGGAATGTTTGGAATGAACATCCCCTGTACACTCTACAACATCAATGGGATATTTTTATACTCTGTGGCAGCTATGACGGCATTTTGTGTCTTAATATTCCTGCTTGTTTTGGGATATGCAAGATGGAAGAAGCTACTTGGTTCC 1338 46.64 MGKGLFSFRLTNPRRRSKTKHHPHPSPPSSLPGPTSPPNNALIAAAAAAGAAAAKGKKKAGGPRLWMRFDRWGRSELVECDKSAIIRLAGIPARDLRILGPVFSQSSNILGREKAMVVNLEFIKAIVTAEEVLLLEPLRQEVLPFVDQLRLQLPQKSPSRTHGTETLDEQENDVHVLTGRQWFPVSETAEALNSELPFEFQVLEIALEVVCLYLDSRVAELERGAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRKWMQNQQSMALLGGVASNSLSAPSSHLHRLNSTRSGSLATSNHLEDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLILTIASFAIAMETWISGMFGMNIPCTLYNINGIFLYSVAAMTAFCVLIFLLVLGYARWKKLLGS 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 180008 182456 + Bpe026032 Bpe07g00026 105795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00026 446 Gene3D Magnesium transport protein CorA, transmembrane region 143 377 - -
Bpe07g00026 446 CDD Mrs2_Mfm1p-like 66 443 IPR039204 -
Bpe07g00026 446 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 6 446 IPR039204 -
Bpe07g00026 446 Gene3D - 55 137 - -
Bpe07g00026 446 Coils Coil 244 271 - -
Bpe07g00026 446 MobiDBLite consensus disorder prediction 1 39 - -
Bpe07g00026 446 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 6 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00026 K16075 MRS2, MFM1; magnesium transporter - zju:107415174 626.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00868 Bpe-Chr5:21869211 Bpe07g00026 Bpe-Chr7:180008 3.18E-99 dispersed
Bpe07g00026 Bpe-Chr7:180008 Bpe13g01373 Bpe-Chr13:18972938 3.92E-88 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe03g00575 . 1 443 MRS2 Gene Family AT1G16010 76.8 1.3e-182 636.0
Bpe13g01373 . 11 391 MRS2 Gene Family AT1G16010 56.2 2.7e-114 409.1
Bpe05g00868 . 1 367 MRS2 Gene Family AT5G64560 78.4 3.0e-151 531.6
Bpe07g00288 . 1 433 MRS2 Gene Family AT3G19640 64.8 3.3e-134 475.3
Bpe07g00026 . 1 446 MRS2 Gene Family AT3G58970 64.7 2.2e-145 512.3
Bpe13g01373 . 11 391 MRS2 Gene Family AT2G03620 67.8 3.9e-131 464.9
Bpe07g00026 . 61 445 MRS2 Gene Family AT4G28580 50.3 8.5e-91 330.9
Bpe05g00868 . 1 329 MRS2 Gene Family AT5G09690 73.7 6.2e-121 430.6
Bpe05g00868 . 23 289 MRS2 Gene Family AT5G09720 66.4 1.2e-81 300.1
Bpe03g00575 . 1 443 MRS2 Gene Family AT1G80900 75.5 3.1e-179 624.8
Bpe13g01373 . 11 391 MRS2 Gene Family AT1G80900 56.1 2.9e-113 405.6
Bpe08g01293 . 121 460 MRS2 Gene Family AT5G22830 82.1 2.2e-156 548.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00026 Bpe_Chr07 FPKM 0.678295 0.0 2.090103 2.669737 1.611288 2.697139 0.0 5.030243 5.932186 7.548891