Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00043 ATGCCTAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACTTGCTCAGCCTGTAATTGCCATAGAAACTTCCATAGAAAAGAAGTTGAAGGAGAGAATGAGTTTCCTCTCCATAGCCAATACCTTAACACCAATAGGGTTGGAAGAAAATTCATCTTCAACCATCATAAGAACATTATAGCTCCAGAAGCTTTAGCCTATTCTACGGCTACAGGCACGTTTATACCCACCAGAACCTTACCCGTTCCCCCTCATCAGATGATAATGTCCTACCAGATGCCCTCTCTTCCTTCGGAATCAGACGAGCAAGAAGGCGGCAATGGTGGCGGGGGAGGAGCGGCTAGGGCTCCGCAGATGGCGAAGAAGAGATTCAGGACAAAATTCAGTCAAGAACAGAAGGAGAAAATGCTAAACTTTGCAGAAAAAATAGGGTGGAAAATGCAGAAGCAAGAAGAGGGTGTGGTGCAGCAGTTCTGCCAAGAGATTGGAGTGAAGAGGAGAGTCCTCAAAGTTTGGATGCACAACAATAAGCATAATCTAGCCACTAAGAATCCATCCTCTTCTGGTTGA 567 45.86 MPSGEEGSIEALTCSACNCHRNFHRKEVEGENEFPLHSQYLNTNRVGRKFIFNHHKNIIAPEALAYSTATGTFIPTRTLPVPPHQMIMSYQMPSLPSESDEQEGGNGGGGGAARAPQMAKKRFRTKFSQEQKEKMLNFAEKIGWKMQKQEEGVVQQFCQEIGVKRRVLKVWMHNNKHNLATKNPSSSG 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 377369 377935 - Bpe020857.1 Bpe07g00043 105812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00043 188 MobiDBLite consensus disorder prediction 94 122 - -
Bpe07g00043 188 Pfam ZF-HD protein dimerisation region 1 28 IPR006456 -
Bpe07g00043 188 Gene3D - 105 182 - -
Bpe07g00043 188 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4-LIKE 1 184 - -
Bpe07g00043 188 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 184 - -
Bpe07g00043 188 SUPERFAMILY Homeodomain-like 107 179 IPR009057 -
Bpe07g00043 188 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 120 176 IPR006455 -
Bpe07g00043 188 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 1 27 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00043 - - - zju:107431435 281.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00043 Bpe-Chr7:377369 Bpe13g00443 Bpe-Chr13:11967088 9.20E-41 dispersed
Bpe07g00043 Bpe-Chr7:377369 Bpe02g01693 Bpe-Chr2:19485985 1.27E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe06g00095 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.8e-50 195.3
Bpe02g00132 . 50 246 ZF-HD Transcription Factor Family AT5G65410 53.7 1.5e-46 183.3
Bpe02g00132 . 1 242 ZF-HD Transcription Factor Family AT4G24660 53.3 2.8e-59 225.3
Bpe06g00095 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.5 1.5e-55 213.0
Bpe02g01693 . 92 286 ZF-HD Transcription Factor Family AT4G24660 52.3 2.6e-44 175.6
Bpe07g00043 . 1 183 ZF-HD Transcription Factor Family AT1G14440 51.3 3.6e-41 165.6
Bpe13g00443 BCT 137 329 ZF-HD Transcription Factor Family AT2G18350 51.0 1.1e-48 190.3
Bpe11g00081 BCT 24 256 ZF-HD Transcription Factor Family AT5G15210 53.2 3.1e-49 192.2
Bpe14g00177 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 7.0e-49 191.0
Bpe14g00177 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 1.4e-56 216.9
Bpe11g00081 BCT 1 281 ZF-HD Transcription Factor Family AT3G28920 51.4 3.4e-55 212.2
Bpe14g00177 . 24 263 ZF-HD Transcription Factor Family AT5G39760 53.4 9.2e-51 197.6
Bpe11g01458 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 53.5 3.9e-51 198.4
Bpe02g00132 . 1 242 ZF-HD Transcription Factor Family AT4G24660 53.3 2.8e-59 225.3
Bpe06g00095 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.5 1.5e-55 213.0
Bpe02g01693 . 92 286 ZF-HD Transcription Factor Family AT4G24660 52.3 2.6e-44 175.6
Bpe14g00177 . 24 263 ZF-HD Transcription Factor Family AT5G39760 53.4 9.2e-51 197.6
Bpe13g00443 BCT 137 329 ZF-HD Transcription Factor Family AT2G18350 51.0 1.1e-48 190.3
Bpe06g00095 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.8e-50 195.3
Bpe02g00132 . 50 246 ZF-HD Transcription Factor Family AT5G65410 53.7 1.5e-46 183.3
Bpe11g01458 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 53.5 3.9e-51 198.4
Bpe11g00081 BCT 24 256 ZF-HD Transcription Factor Family AT5G15210 53.2 3.1e-49 192.2
Bpe14g00177 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 7.0e-49 191.0
Bpe07g00043 . 1 183 ZF-HD Transcription Factor Family AT1G14440 51.3 3.6e-41 165.6
Bpe14g00177 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 1.4e-56 216.9
Bpe11g00081 BCT 1 281 ZF-HD Transcription Factor Family AT3G28920 51.4 3.4e-55 212.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21593 PF04770 ZF-HD_dimer 8.00E-12 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00043 Bpe_Chr07 FPKM 2.383562 3.625495 1.600749 0.0 7.03405 9.74258 10.072128 0.974403 0.845058 0.903878