Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00048 ATGGTTTGCCCCGGCGAAATACTAGCTATGCTGGGTCCTTCGGGAAGCGGAAAAACCACCCTCCTTACAGCTCTCGGAGGTCGCCTCCACGGTAAGTTATCCGGCAAGATCACGTACAACGGCTTGCCGTTTTCTGGCTCCATTAAACGACGAACAGGCTTTGTTGCTCAAGACGACGTTTTGTACCCTCACCTCACAGTCGCCGAAACCCTAGTTTTCACTGCTCTTTTGAGGCTCCCCAACAGCTTGACTAAAGACGAGAAAGTTCAGAACGTGGACCGAGTTGTGACCGAGCTGGCTTTGACTCGTTGCCGGAATAGCATGATCGGAGGGCCGCTACTGAGAGGGATTTCTGGTGGGGAGAAGAAGAGGGTTAGTATAGGTCAGGAAATGCTGATAAACCCGAGCTTGCTTTTGTTGGACGAGCCCACTTCCGGTTTGGATTCGACAACGGCTCAGCGGATCTTGACCACCATCAAGCGGCTAGCTAACGGCGGTCGGACAGTGGTCACGACAATTCACCAGCCGTCGAGCCGCCTCTACCACATGTTTGATAAGGTAGTTCTTCTCTCCGAAGGCTGCCCCATCTATTACGGCCCCGCTTCCACAGCCCTGGATTATTTTTCGTCCATCGGATTTTCCACTTCCCTTACCGTCAACCCAGCTGATCTCTTGCTCGATCTTGCCAATGGTAAGTCCTGCGTTGATCATGACAACGAAACATGCATGAAAAAAATCAAAAGTAAACTCTCAAATCTCCGCTGTACAGGAATTGGGCCGGATTCTAGACACGCAACTGAGCCCGGAGAAGGGATGGAGGCGGAGGAGAAGATGGGAGACAAGAGATCGGAGCAGTGGTGCACCAGTTGGTGGCATCAATTCACAGTTTTGCTCCAGAGGGGGATGAGAGAGAGAAGATACGAAGCTTTCAACAAACTGAGAATTTTTCAAGTCATAAGCGTCGCCACCCTCGGCGGGCTGCTATGGTGGCATACTCCGCCGTCTCGCATCGAAGACCGCATTGCGTTGCTGTTCTTCTTCTCAGTTTTCTGGGGATTCTACCCACTCTACAACGCTGTTTTCACCTTCCCACAAGAAAGAAGAATGTTGATAAAAGAAAGGTCGTCGGGAATGTACCGGCTATCTTCCTACTTTCTGGCCAGAACCGTCGGAGATCTGCCATTAGAGCTCGCTCTCCCCACTGCATTCGTATTCATAATATACTGGATGGGAGGTCTCAAACCCGACCCGGTAACCTTCATCCTCTCCCTACTCGTAGTCCTCTACAGCGTCCTCGTTTCTCAGAGCCTCGGCCTGGCCATCGGAGCTATTTTAATGGAGGTTAAACAGGCGACAACTTTGGCCTCTGTTACCACGCTGGTTTTCTTGATCGCCGGCGGCTACTACATTCAGCAAATTCCTCCTTTCATTGTCTGGCTCAAGTATTTGAGCTACAGTTATTACTGTTACAAGCTTCTTCTCGGAGTTCAGTACAGCGAGGATGACATCTACGAGTGGTCCCCCGGAGTTTATCGTCAGGTCGCTGATTTTCCGGCGGTCAAATCGATTGGCCTTCGGCATCTGTGGGTGGATCTGGGTATAATGGCTTTGATGTTGGTCGGCTATCGACTCGTTGCTTATCTGGCTCTACACCGTGTAAGGTTGAGGTAA 1671 50.99 MVCPGEILAMLGPSGSGKTTLLTALGGRLHGKLSGKITYNGLPFSGSIKRRTGFVAQDDVLYPHLTVAETLVFTALLRLPNSLTKDEKVQNVDRVVTELALTRCRNSMIGGPLLRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILTTIKRLANGGRTVVTTIHQPSSRLYHMFDKVVLLSEGCPIYYGPASTALDYFSSIGFSTSLTVNPADLLLDLANGKSCVDHDNETCMKKIKSKLSNLRCTGIGPDSRHATEPGEGMEAEEKMGDKRSEQWCTSWWHQFTVLLQRGMRERRYEAFNKLRIFQVISVATLGGLLWWHTPPSRIEDRIALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTVGDLPLELALPTAFVFIIYWMGGLKPDPVTFILSLLVVLYSVLVSQSLGLAIGAILMEVKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYSEDDIYEWSPGVYRQVADFPAVKSIGLRHLWVDLGIMALMLVGYRLVAYLALHRVRLR 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 409729 411685 - Bpe020861.1 Bpe07g00048 105817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00048 556 Pfam ABC transporter 4 145 IPR003439 GO:0005524
Bpe07g00048 556 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 2 552 - -
Bpe07g00048 556 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 217 IPR003439 GO:0005524
Bpe07g00048 556 ProSitePatterns ABC transporters family signature. 117 131 IPR017871 GO:0005524
Bpe07g00048 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 211 IPR027417 -
Bpe07g00048 556 CDD ABCG_EPDR 4 199 - -
Bpe07g00048 556 Pfam ABC-2 type transporter 174 274 IPR043926 GO:0140359
Bpe07g00048 556 Gene3D - 1 211 IPR027417 -
Bpe07g00048 556 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 552 - -
Bpe07g00048 556 Pfam ABC-2 type transporter 293 498 IPR013525 GO:0016020|GO:0140359
Bpe07g00048 556 SMART AAA_5 4 194 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00048 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - qsu:111992443 892.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00048 Bpe-Chr7:409729 Bpe13g01320 Bpe-Chr13:18315576 0 dispersed
Bpe07g00048 Bpe-Chr7:409729 Bpe02g00689 Bpe-Chr2:4676704 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g968 . . . . . Bpe07g00048 . . Cmo06g00554 Cmo16g00550 . . . . . Cpe14g00425 . . . . . . . . . . . . . . . . . . Cone9ag0341 . . . . . . . . . . . Bma12g00629 . . . Cma06g00550 Cma16g00503 Car06g00489 . Cpe01g00545 . . . . . . . . . . . . . . . . Csa04g00716 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00048 Bpe_Chr07 FPKM 1.381166 2.059331 3.261052 2.46327 2.934271 3.140119 3.256206 11.22122 10.527325 10.848686