Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00049 ATGCTGTTGATGCGGAGAGGATTAGCTTGCTGCTCCATCGATAGAGATGCCAGCTTCGACTTCGATGAGCAAGACAGAATAACGACATATGATGGTCTTGAGAGCTGCATTCTCAACCATCAAACTTATGAAAATGAAAGCAGAACAAGCAGAGGAGACGAATGTGCATCCGAGTCGATGGAGGATTACGATTCAAGCTGTTCTTCAAGCAAAGATGCATCTGGTTCCTTCTCATTTAAATGGTTACCGACTAAGAAGAACGAGTATCCTATTGCTGAATGGGATGAGTCAGAAAGCCCACCGCACTTTTACTACAGAGAGAAACCTTCTAAAGCTGTTCAGGTTTCAGATGTGGATGCCATGAAAGAAAAATATGCAAAATTATTGTTGGGGGAAGATGTAACAGGAGGCAAGAAAGGCCTCACCACTGCACAAGCATTGTCTAATGCCATTACTAATCTAGCAGTAACCATTTTTGGCGAGCTGTGGAAATTGGAACCTCTGCATGAAGAAAGAAAAGCAAAATGGCAAAGAGAAATGAGTTGGTTGCTTTCTCCAACTAATTATATGGTTGAATTGATTCCTACCAAGCAGAATGGTGCCAATGGTGGAATCTTGGAGATAATGACACCAAAGATACGCGGGGACATCCACATGAATCTTCCAGCACTTCAGAAGTTGGACTCCATGCTTATTGATACATTGGATTCAATGGTGAATACAGAGTTTTTGTATGCAGAAGGAGGTAGCCGAGCTGAAGGAAGAAGCAAGCGAGGATCAAATGGCAAGAAATGGTGGCTTCCATCACCGCAGGTGCCACCTTCTGGTCTCTCTGAGGGTGAGAGGAAAAAGTTGCTTACCCATGGTAGAGTCGTCTATCAAATATTAAAAGCTGTCCAATCTATAAACCAAAGCATTTTGTCTGAAATGCCTGTGCCAACTGTTGTTAAGGAGGCAATTTGCAAGTGGGGAAAGACATGCCTGAACGAGAAGTTGCACGAGATTTTGATGGGAGAACCAAGCACAGCAGAGAACATGCTCAATGCTCTTAATCTGAAAACCCAACACAGTGTACTTGAGGTTATTAACAGGTTGGAAGCTGCGATGTTTGCATGGAAAGAGAAAATTATGGAACAAGATGGTGGAAAATCTCCAATACGAACATCGTGGTCATCCTTGATTAAGGACTCGACATCAGAGAGGGAGAAGGTGGAGCTGCTCCTGGATCGAGCCGAAACCCTTCATCAGCTGCTTAAAATGAGATTTCCAAACCTTCCTCAATCATTTCTTGATGCAAAGAAAGTTCAACATGGGAAGGATATTGGACATTGCACTATGGAAGCATATTCAAGGGCACTTGGAAACTTGGCTCTTAACATACTTTCAAGAATAGGAGATATATTACGAGAGGATGCTTTGACAAATCCAAAAACTGCAACAGTAGAAATTGGCTTGCCTGTACCGAGCTGCACTACTTCTCCAGACTTTCAATCCTTCATCAATCAAACGAACAAGTTAGAAGGACAGCCTTATGACTCTGCTTTTGCATCCAGTAGCAATTCAGATGCAGAATTCTCATGCAACGAGGCTAAATCAAGGTCCGTAACGGCAACCCCAAGTTGTGGTCGATCATTGTGCTTGCGCAAGGCCTGCCGCGAGTATGTCTCCAAGAAATTCACTTTGATGTGA 1689 43.22 MLLMRRGLACCSIDRDASFDFDEQDRITTYDGLESCILNHQTYENESRTSRGDECASESMEDYDSSCSSSKDASGSFSFKWLPTKKNEYPIAEWDESESPPHFYYREKPSKAVQVSDVDAMKEKYAKLLLGEDVTGGKKGLTTAQALSNAITNLAVTIFGELWKLEPLHEERKAKWQREMSWLLSPTNYMVELIPTKQNGANGGILEIMTPKIRGDIHMNLPALQKLDSMLIDTLDSMVNTEFLYAEGGSRAEGRSKRGSNGKKWWLPSPQVPPSGLSEGERKKLLTHGRVVYQILKAVQSINQSILSEMPVPTVVKEAICKWGKTCLNEKLHEILMGEPSTAENMLNALNLKTQHSVLEVINRLEAAMFAWKEKIMEQDGGKSPIRTSWSSLIKDSTSEREKVELLLDRAETLHQLLKMRFPNLPQSFLDAKKVQHGKDIGHCTMEAYSRALGNLALNILSRIGDILREDALTNPKTATVEIGLPVPSCTTSPDFQSFINQTNKLEGQPYDSAFASSSNSDAEFSCNEAKSRSVTATPSCGRSLCLRKACREYVSKKFTLM 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 417633 420625 + Bpe020862.1 Bpe07g00049 105818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00049 562 ProSiteProfiles PRONE domain profile. 108 481 IPR005512 GO:0005085
Bpe07g00049 562 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 21 549 IPR038937 GO:0005085
Bpe07g00049 562 Gene3D PRONE domain, subdomain 1 109 345 - -
Bpe07g00049 562 Gene3D PRONE domain, subdomain 1 346 481 - -
Bpe07g00049 562 Coils Coil 394 414 - -
Bpe07g00049 562 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 116 475 IPR005512 GO:0005085
Bpe07g00049 562 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 14 21 549 - -
Bpe07g00049 562 MobiDBLite consensus disorder prediction 250 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00049 - - - qsu:112039276 684.485
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00049 Bpe-Chr7:417633 Bpe10g00651 Bpe-Chr10:13169770 8.20E-102 dispersed
Bpe05g00718 Bpe-Chr5:20709463 Bpe07g00049 Bpe-Chr7:417633 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g942 . . . . . Bpe07g00049 . . . . . . . . . . Cpe02g00587 . . . . . . . . . . . . . . . . Cone6ag0886 Cone9ag0890 . . . . Blo03g00905 . . . . . . Bma12g00627 . . . . . . . . Cpe06g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003226 0 5 2 2 2 0 2 1 0 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 9 2 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00049 Bpe_Chr07 FPKM 34.087925 34.04493 33.077972 32.544872 39.666763 41.297363 39.222565 36.543438 35.027515 33.839088