Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00050 ATGGGGTCAAGTGGAAGTAAGGGTAAAGGATTGAGCTGTCCTTCTTCGTCCATCTCTTTTTCAGCAAAATTTCGAAGGGGTCGGTCCAAGGCCTTCCGGGGTTTTCAATCTTCTTGCCTTTCTTCTCGCTCTGGATCTTACAATAGCGACGACGACTATCGTATTCATGATGACCAGGAAAAAGAGAATGAAGGAGATGCTTCTCTTAATCAGATCCAAAGAGACAGAGTTCAGATGAAAGTTGATGGTTTTAGAAGGGTGAAAGTTGAAAAATCTTCTGAAATGCCATACTTATCATCTAATATTGAGGTAGATGAATGGAATCAAGCTACTCTCGCTGATGTAGACACCAGAACTGGTAGCCCCCCAGCCCAAGCTTCATCTACTCAATCATTGAATCCATCAAGTCGCTCTTGCTTTAGGTTCATTCCGGGTAGTCTTAGCTTTAGACTAACCAGATCCACCAGTTTAGGATCCTCAAGTCCCTATCCAGTTTCTTCATCAAGTCTCCCAGTACTATATAATGAAGATGAGCTTCATTTACAGGCTGAACATGTTAGAGCCTTGATTAATCGAGATGAAACTCAGGAAGATAACGACGCTCTTTTTTCATCACAACTTGATGGAACTCAAACATCATGCAATGAAAATCATACTGACGACTTTAGATTAAATATGAGGGCATTTGAAATTTCTGATTGCCCATCATATGATGAAACAACTACTCTTGCATGTGATCGAGAGACAAATGTTGGTTATACAGAAGTGAGGGCTCATGACCAGGGAACATGTGTTGATAATACACAAGTGAGGACTGGTATAAACATTTGCTCTCCTATAATCAGTAATGAATCTGAAAATGCTGAGTCTAGATTATCTGATAGCCAGGGAGTAAACAGCGAACCAATTGAAAGATATTGCCGTTTCAGCCGAACATTAAGTGTTGGAAGACTTCGGGACAGAGTTATTCGTACACCATCATTATGTCCTTTCCAGCAAGAGAGAGAAGAGAGAAATGGCAGTCAAAATAGTGGTAGAGAAGTAAGGAATGTTGATAGACGGGCGCTGATACCTGAAAGTGATGAAGTAACCTCTTCAATTACATCTTATCGCCCTCCCAGTTTGTCTAACTCCTTGTTCAGCATCCAAGATTATGAGGTGCAATCCATGCGACCAAGAGAATCCAGATATTATGATCTGCTGGAGCATAGTTCTAACTTCCTTGAAAGGAGGAGGAGAATACGTTCCCAGGTTGGTGCTCTTCAACGCTTGGGAAGCCGATTTGAGAACGTAAATGGACATGAAAGATCATGCACTTTAGCTGGTCAACATAGATCTGGTTTTTGTACATGTCGTACTAATAATAGGATTGCCAATTCAAATGAAAATGCAAGTGCCAGGGCAAGCATATCCAGAATTGTCTTGTTGGCTGAAGCATTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTCTTTCTTCCCAGCCTTCTGCATCTTCAATTGGATCTATTCCTGCCCCTAATGAAATTGTGGATTCTTTACCTGACAAATCATACTCCAAGTTGCAAAAACATCAGGACGAGGAGGTTGCTCTGTGTTATATATGTCTTGTGGAGTATGAAGAAGGAGATAGAATGAGAACACTTCCTTGCCATCACGAATTTCATAAAACATGTATAGACAAGTGGCTGAAAGAGATTCAAAGGTAG 1716 40.97 MGSSGSKGKGLSCPSSSISFSAKFRRGRSKAFRGFQSSCLSSRSGSYNSDDDYRIHDDQEKENEGDASLNQIQRDRVQMKVDGFRRVKVEKSSEMPYLSSNIEVDEWNQATLADVDTRTGSPPAQASSTQSLNPSSRSCFRFIPGSLSFRLTRSTSLGSSSPYPVSSSSLPVLYNEDELHLQAEHVRALINRDETQEDNDALFSSQLDGTQTSCNENHTDDFRLNMRAFEISDCPSYDETTTLACDRETNVGYTEVRAHDQGTCVDNTQVRTGINICSPIISNESENAESRLSDSQGVNSEPIERYCRFSRTLSVGRLRDRVIRTPSLCPFQQEREERNGSQNSGREVRNVDRRALIPESDEVTSSITSYRPPSLSNSLFSIQDYEVQSMRPRESRYYDLLEHSSNFLERRRRIRSQVGALQRLGSRFENVNGHERSCTLAGQHRSGFCTCRTNNRIANSNENASARASISRIVLLAEALFEVLDEIHQQSVVLSSQPSASSIGSIPAPNEIVDSLPDKSYSKLQKHQDEEVALCYICLVEYEEGDRMRTLPCHHEFHKTCIDKWLKEIQR 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 422197 425133 - Bpe020863.1 Bpe07g00050 105819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00050 571 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 571 - -
Bpe07g00050 571 MobiDBLite consensus disorder prediction 115 135 - -
Bpe07g00050 571 Pfam Ring finger domain 535 568 IPR001841 -
Bpe07g00050 571 ProSiteProfiles Zinc finger RING-type profile. 535 565 IPR001841 -
Bpe07g00050 571 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 571 IPR013083 -
Bpe07g00050 571 MobiDBLite consensus disorder prediction 35 70 - -
Bpe07g00050 571 MobiDBLite consensus disorder prediction 49 69 - -
Bpe07g00050 571 MobiDBLite consensus disorder prediction 332 371 - -
Bpe07g00050 571 MobiDBLite consensus disorder prediction 339 359 - -
Bpe07g00050 571 SUPERFAMILY RING/U-box 513 568 - -
Bpe07g00050 571 CDD mRING-H2-C3H2C2D_ZSWM2 535 567 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00050 - - - jre:108980169 506.523
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00717 Bpe07g00050 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00050 Bpe-Chr7:422197 Bpe02g01228 Bpe-Chr2:15913249 6.89E-09 dispersed
Bpe05g00717 Bpe-Chr5:20704160 Bpe07g00050 Bpe-Chr7:422197 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g939 . . . . Bpe05g00717 Bpe07g00050 . . . Cmo16g00558 . . . . . Cpe14g00432 . . . . . . . . . . . . . . . . . Cone6ag0884 Cone9ag0888 . . . . . . . . . . Bma05g00899 . . . . . Cma16g00511 . . Cpe01g00536 . . . . . . . . . . . . . . . . Csa04g00707 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005159 0 4 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00050 Bpe_Chr07 FPKM 1.474537 1.910632 0.454137 0.099799 0.537323 0.0 0.0 0.0 0.0 0.0