Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00055 ATGATTATAGTTTCTGTGCCCTCTGTTGTTGCCTCCATCGTTATCTTCATAAATCTTCGTGTTTTCGGTCCTGGGTTGAATCCTTTTGCTCCCTACTGTTTGGCTAATCATTCCATTTTTTTACGCTTCTTGAACATGCTCCAGGCAGAGGGGATCTCGATCCGTCGAAGCTTATCGAGAAGGCGCTCCTTCCAATTTGGGGTCGTTGACAGGGATGACAGAGGTTGGACGCTACTTCACATTGGTGCTCGAAAGGGTGATGTCAAAGAGGTGATGCGACTTCTTGATGAAGGAATGGACGTGAATGTGATGACATGGGGCCACAAATCCAAGGGGGCGACTCCTCTCCACCTTGCTGCCGAGGGCGGTCAACTTAAAGTTATGGATGTACTCCTCGAAAGTGGTGCCGACATCGATGCCAGGACCAAAGGGGCTTGTGGTTGGACACCGCTTCATAGTGCGGTGAAAGAACGGAGGTGGGAAGCTGTGAAATTCCTGATAGAGAATGGAGCATTCTTGCCAGACGACATAAATGATTGCAGATTTAATCCTCCACTCCACTACTTTCCTGGTCTGGAGTGGGCTTACGAGGAGATGAAACGCCTCCGACAAGAGAACTTGTCTGCGGAGGAAACATCATGCAGCTCCGACAGCTGA 657 49.47 MIIVSVPSVVASIVIFINLRVFGPGLNPFAPYCLANHSIFLRFLNMLQAEGISIRRSLSRRRSFQFGVVDRDDRGWTLLHIGARKGDVKEVMRLLDEGMDVNVMTWGHKSKGATPLHLAAEGGQLKVMDVLLESGADIDARTKGACGWTPLHSAVKERRWEAVKFLIENGAFLPDDINDCRFNPPLHYFPGLEWAYEEMKRLRQENLSAEETSCSSDS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 455035 456242 + Bpe020867.1 Bpe07g00055 105824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00055 218 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 51 217 - -
Bpe07g00055 218 SUPERFAMILY Ankyrin repeat 71 188 IPR036770 -
Bpe07g00055 218 Gene3D - 44 210 IPR036770 -
Bpe07g00055 218 ProSiteProfiles Ankyrin repeat region circular profile. 146 171 - -
Bpe07g00055 218 ProSiteProfiles Ankyrin repeat profile. 111 143 IPR002110 GO:0005515
Bpe07g00055 218 SMART ANK_2a 146 179 IPR002110 GO:0005515
Bpe07g00055 218 SMART ANK_2a 111 140 IPR002110 GO:0005515
Bpe07g00055 218 SMART ANK_2a 74 103 IPR002110 GO:0005515
Bpe07g00055 218 ProSiteProfiles Ankyrin repeat region circular profile. 111 143 - -
Bpe07g00055 218 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 51 217 - -
Bpe07g00055 218 Coils Coil 192 212 - -
Bpe07g00055 218 ProSiteProfiles Ankyrin repeat profile. 146 171 IPR002110 GO:0005515
Bpe07g00055 218 ProSiteProfiles Ankyrin repeat region circular profile. 74 103 - -
Bpe07g00055 218 ProSiteProfiles Ankyrin repeat profile. 74 106 IPR002110 GO:0005515
Bpe07g00055 218 Pfam Ankyrin repeats (3 copies) 79 171 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00055 - - - jre:109014239 293.893
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00711 Bpe07g00055 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00055 Bpe-Chr7:455035 Bpe11g00198 Bpe-Chr11:1339993 1.24E-07 dispersed
Bpe05g00711 Bpe-Chr5:20668337 Bpe07g00055 Bpe-Chr7:455035 2.49E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g916 Blo02g01165 . . Bda08g00449 Bpe05g00711 Bpe07g00055 . . . Cmo16g00572 . . . . . Cpe14g00444 . . . . . . . . . . . . . . . . . Cone6ag0873 Cone9ag0879 . . . . . . . . . . Bma05g00893 . . . . . Cma16g00523 . . Cpe01g00525 . . . . . . . . . . . . . . . . Csa04g00688 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005963 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00055 Bpe_Chr07 FPKM 19.574516 20.588831 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0