Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00057 ATGCCCGAACCGGAGCTCGATGGCGCGGCACACTTTCCTCTCAAAACGACGGTCGATGATAGGGACCCGCTCTTGGACTTCGATGTCGATATGGGGAGCCCGTGGCCGTTGGATCAGATCTCTCCGATCCTTATCACTTCCTCCGATCAGCCTTGCTCTCCGCTCTGGGCTTTCTCCGACGGGGAAGAAGTTGGGGATGGAAAACTCCATGCCCATGCTCGCTCAGTGCACGGTTATGAGCTTTTCGTTTTCGATTCACTCATTTGGATTATATTTCTAAATTCAGGCGTAAATAGTATGAATTTGGCGACGGAAAAACCAACCCAGAACATTGAAACAAGACTGCTCCAATTACCCCCTCTGTGGGGACTTAAATCAGCGAAGAATCCAGATGGGTACTGCTTGATCAAAGAGAAAATGACTCAAGCCCTTAGATACTTGAAAGAATTAACCGACCAGCACGTTCTAGCTCAGGTCTGGGCACCAGTAAAGAGCGGGGGACGATATGTGCTGACAACTCTCGAGCAACCCTTCGTTCTCGACGCCCAAAGCAATGGACTTCATCAGTATCGAATGGTCTCTCTGATGTACATGTTCTCAGTCAATGGCGAAACTGACGGAGTTCTTGGACTTCCTGGCCGTGTATTCCAGCAGAAATTGCCGGAATGGACTCCAAACGTGCAGTTTTACTCGAGCAAAGAGTATCCAAGGAGAAATCATGCTCTTCACTACAACGTCCAGGGAACTTTGGCTTTGCCGGTCTTCGAATCGTCCGGCCAATCCTGTATTGGTGTACTCGAGCTCATTATGAACTCACCCAAAATCAATTATGCTCCTGAGGTTGATAAAGTCTGTAAAGCTCTTGAGGCTGTCAACTTGAAAAGCTCAGAAATTTTGGATCATCCAAACACACAGATATGCAATGAAGGTCGCCAAAATGCCTTGGCTGAAATTTTGGAGGTTCTTACAGTTGTATGTGAAATTCACAAATTACCACTGGCTCAAACCTGGGTTCCTTGCAAGCATGGGAGCGTTCTTGCCAATGGCGGTGGTTTAAAGAAGAGCTGCTCTAGCTTTGATGGCAGTTGTAGGGGACAAGTCTGCATGTCTGCAACTGATATAGCGTCTTATATTGTTGATGCTCATGCTTGGGGTTTTCGAGAGGCTTGTCTTGAACATCATTTGCAGAAAGGCCAAGGAGTGGCTGGCCGGGCGTTTTTGTCCCAAAGCTCATGTTTCTCCATGGATATAACCCAGTTCTGCAAGACAGAATACCCTTTAGTGCACTATGCTCGAATGTTTGAGTTAAAGAGCTGTTTTGCAGTCTGCCTCCGGTGCAGTTTAACCGGCGATGATGATTATATTCTTGAGTTTTTCCTCCCGTCCGTCGTAAAAGAATATTACGAACAACTGACTTTGTTGGGCGCGTTATTGGCTACGATGAAACACCATTTTCACACGCTCAAGGTTGCATCGGGAATCAAGTTCGAAGAGGGGGAAATTTTCGTAGAAATCATAGAAGCTTCGACTGATGGCGGACTAAACTCTAGATTTGAATATATTCTAATACCTAAATCTGTCGAATTGTCACCTGAATCTGATCTTGCTCCTAATGGTGGAGAGATGTTTGGATTTAATTCAACAAAACAGAAGTTACTGGCTGGTTGTGATGTTGACGAAAACAATGCTGATCCGGAGAGTAAAACACTTGTTCCTTCTCCTCCGAAAGACGCAAGAAAGAGATTGAAGAGAAAACGAGGGAAAACGGAGAAATCGATAGGTTTAGATGTTCTTCAACAGTATTTCACCGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGAGTTTGCCCGACAACGATGAAGCGCATCTGTCGGCAGCACGGAATTTCCCGCTGGCCATCTCGGAAGATCAACAAGGTTAATCGATCACTCTCTAAGCTAAAACGAGTAATTGAATCCGTCCAAGTTGCCGAAGGAGCCTTTGGTTTGACTCCTCTCGCCACAACCACTAATTCTCCCCCATTTTCCCCCAACGGACCAAATCAGCGTAACTCGCCCATCCGTAAGCCGCGTGATCATCATGGCGAAAATAAAGAATTATCACCAGGAAAAGACCTACCATCTTGGATGGACGACGGATTCGTTGGAGGGAGATTGCATTTTGACGAATATATTCACGACAAAAGTGGCCTACATTCTAACAAGTCCCAAATGAAGAGTGGGTCGAGGGAAGAGAGTAGAGGGACTCCTACTTCTCATGGCTCTTGCCAAGGTAGTCCTGCTAATGAAAGCATTCCAGCCAAGGATCCAGCTGTTTTCCTCTATCATGAGCACCCCATTACCGGAGTGGATTCCCCCGGAAACCTCAATCCGCCAGATTCATATCCGGTTCATGATCTACTTCGGACAACAGAAGTCGAAGAACCGTTTGGAGCAATGCTTATACAAGATGCCGGAAGTTCAAAAGATTTAAGAAATCTTTGTCCATCTGCAGCAGATGCCGTTTTGGACGAGCACATTCCCGAATCTTATTGGCCACATTTTTCCCATTCAGCGTCTGCACAATTAGTCGATAATGCAGGTCAAGCAGCGGCAAATGACGAAACGAGGCAAGAAACAAAGAGGATGACGATTAAGGCGACATATAAAGAAGATATCATAAGATTTCGCATACCCTTGAGCTCGGGTGTAGTGGAGTTAAAAGAAGAAGTGGCTCAGAGGCTGAAACTGGAGGTGGGTACCTTTGATATAAAATATATAGACGATGATCAAGAAAGGGTTCTTATAGCCTGTGATGCAGACCTTCAGGAATGCGTCGAGATTTCAAAGTCATCAGGCAGTAACATAATCAGACTCTTGATTCATGACTTAAACAGCAATCTTGGAAGCTCCTGTGAGAGCACAAGGGGAATGAGTATTAGTTCGTAG 2928 45.77 MPEPELDGAAHFPLKTTVDDRDPLLDFDVDMGSPWPLDQISPILITSSDQPCSPLWAFSDGEEVGDGKLHAHARSVHGYELFVFDSLIWIIFLNSGVNSMNLATEKPTQNIETRLLQLPPLWGLKSAKNPDGYCLIKEKMTQALRYLKELTDQHVLAQVWAPVKSGGRYVLTTLEQPFVLDAQSNGLHQYRMVSLMYMFSVNGETDGVLGLPGRVFQQKLPEWTPNVQFYSSKEYPRRNHALHYNVQGTLALPVFESSGQSCIGVLELIMNSPKINYAPEVDKVCKALEAVNLKSSEILDHPNTQICNEGRQNALAEILEVLTVVCEIHKLPLAQTWVPCKHGSVLANGGGLKKSCSSFDGSCRGQVCMSATDIASYIVDAHAWGFREACLEHHLQKGQGVAGRAFLSQSSCFSMDITQFCKTEYPLVHYARMFELKSCFAVCLRCSLTGDDDYILEFFLPSVVKEYYEQLTLLGALLATMKHHFHTLKVASGIKFEEGEIFVEIIEASTDGGLNSRFEYILIPKSVELSPESDLAPNGGEMFGFNSTKQKLLAGCDVDENNADPESKTLVPSPPKDARKRLKRKRGKTEKSIGLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQVAEGAFGLTPLATTTNSPPFSPNGPNQRNSPIRKPRDHHGENKELSPGKDLPSWMDDGFVGGRLHFDEYIHDKSGLHSNKSQMKSGSREESRGTPTSHGSCQGSPANESIPAKDPAVFLYHEHPITGVDSPGNLNPPDSYPVHDLLRTTEVEEPFGAMLIQDAGSSKDLRNLCPSAADAVLDEHIPESYWPHFSHSASAQLVDNAGQAAANDETRQETKRMTIKATYKEDIIRFRIPLSSGVVELKEEVAQRLKLEVGTFDIKYIDDDQERVLIACDADLQECVEISKSSGSNIIRLLIHDLNSNLGSSCESTRGMSISS 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 462325 466200 - Bpe020869.1 Bpe07g00057 105826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00057 975 SMART PB1_new 875 957 IPR000270 GO:0005515
Bpe07g00057 975 Pfam PB1 domain 876 956 IPR000270 GO:0005515
Bpe07g00057 975 MobiDBLite consensus disorder prediction 686 701 - -
Bpe07g00057 975 ProSiteProfiles RWP-RK domain profile. 572 660 IPR003035 -
Bpe07g00057 975 MobiDBLite consensus disorder prediction 560 588 - -
Bpe07g00057 975 MobiDBLite consensus disorder prediction 664 685 - -
Bpe07g00057 975 Gene3D - 872 956 - -
Bpe07g00057 975 MobiDBLite consensus disorder prediction 730 766 - -
Bpe07g00057 975 MobiDBLite consensus disorder prediction 743 762 - -
Bpe07g00057 975 CDD PB1_NLP 876 956 IPR034891 -
Bpe07g00057 975 PANTHER PROTEIN NLP8 95 970 IPR045012 GO:0003700
Bpe07g00057 975 MobiDBLite consensus disorder prediction 664 709 - -
Bpe07g00057 975 ProSiteProfiles PB1 domain profile. 875 957 IPR000270 GO:0005515
Bpe07g00057 975 SUPERFAMILY CAD & PB1 domains 871 960 - -
Bpe07g00057 975 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 95 970 - -
Bpe07g00057 975 Pfam RWP-RK domain 593 640 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00057 - - - csv:101212500 1185.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00708 Bpe07g00057 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00057 Bpe-Chr7:462325 Bpe14g01069 Bpe-Chr14:8022055 1.10E-21 dispersed
Bpe05g00708 Bpe-Chr5:20652962 Bpe07g00057 Bpe-Chr7:462325 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g190 . . Bda06g00162 . Bpe05g00708 Bpe07g00057 . . Cmo06g00603 Cmo16g00577 . . . . . Cpe14g00447 . . . . . . . . Cla07g01080 Cam07g1420 Cec07g1236 Cco07g1216 Clacu07g1141 Cmu07g1123 Cre07g1500 . . . . . . . Cme07g01523 . . . . . . . . . . . Cma06g00596 Cma16g00528 . . . . . . . . . . . . . . . . . . . . Chy07g01125 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe05g00708 BCT 194 987 NLP Transcription Factor Family AT1G64530 51.4 5.6e-212 734.2
Bpe07g00057 BCT 191 968 NLP Transcription Factor Family AT1G64530 51.3 8.1e-211 730.3
Bpe07g00057 BCT 270 968 NLP Transcription Factor Family AT4G24020 53.6 1.7e-197 686.0
Bpe05g00708 BCT 273 987 NLP Transcription Factor Family AT4G24020 53.0 2.8e-195 678.7
Bpe14g01069 . 152 951 NLP Transcription Factor Family AT3G59580 52.3 2.0e-206 716.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21594 PF00564 PB1 5.20E-18 CL0072 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00057 Bpe_Chr07 FPKM 3.043659 3.43199 1.910096 2.01408 1.447756 2.015532 1.369006 2.513426 3.689565 3.881087