Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00068 ATGACTCTGAACTTAAGCTGCCCCTGGCTTGTCCGGCTTTCGCTCCCATCGCCACAGATCGTCACTCTGAACAGTTTTGCTTTCTCGCCTTCGTTGCATTGTTCCAACTCTGTGGTTTTTGATAGCTTCTCGAGGTCTCCCAAGCTTAATGCTTCTTTGAAAGAGAGCGGAAGTGCGGCTTCGGCTGAAACTCCGGTTTCAGAGCTTCTGGACGACGATTTGCTTGGCAAGATCTCGGGAGCGCAAGATTCTAATGATGTGTTGTCGATGATCGCCAATAAGACTCAGAAAAATGAAGGTGTTGTTAGTGTCTCCGATTGTTGTTTGATTATATCTGCTGCGCTTGATCGCAATAATCCCGAGCTTGCACTGTCTGTTTTATACGCAATGCGCTCCAGTGTCGATCTAGCTAGTTTCAATCAAAATAGTCCTTATCTTGGAAGATGGATGTGGTCAAAGCCAGACGTCCATGTCTACACAATGTTAATCCAAGGTCTAGCAGCATCCTTGAGGGTTTCTGATGCTACCAAGATGATTCAGAACATTTGCCGGGTAGGATTATCTCCTGGTGAGGAGGTTCCTTTTGGAAAGGTTGTGCGATGTCCAAGTTGTATGGTGGCTGTAGCTGTTGCACAACCACAAAATGGTATTCAGATAGTATCTTGTGCACAGTGCCGCTACCAGTATGAACTTATTTCTGGGGACATAATCAGTATTCAGTCTGAAGAAATCAGCATGGATGTCCCAGCATGGAAAAGGGGACTCAGATTTTTGAAACTGATGAAACAAAGTGTCCCTGCGGCTGTTCACTCCATAGTGGTGCAAACACCATCTGGAGCTGGACGTACACACAAGTTTGCCACAGAAACAGTAGATCTTCCTGCACAACAGGGAGAAAGGGTGACGATTGCTTCAGCATCTCCAGCTAATCTTGCTAGAGGGATTGGTCCTTTTAAATTCAGTCCCAAGGCTCCAAATTTCTACCACGGGGAGCCTCTGTGCTTGACAAACCATAAAGATGGTCGGGAATCACTATTACTTAGAGCCCCAACAAAGGAAGGGAACTCGTCCCTACTTAACCCATCCGTCCTTTTTCCACTTCTAGTGTTGTTAGCTTCTGGAGATGCTGCCTCCGGAGTTATTGATCCCAGCTTGCCTCAGCTCCTTACAGTGGCTGGAGTTTCTTCTCTTGCTGCTGGAGCTATTTTTAACACATTTGTTTTACCCCAATTAAATCAGCTTCCTCAAAAAAAAGTTGATGTAGTTGCTATCAAACAACAACTCTTATCTCAATATGATATGCTTCAATCTCGCATCATGGACCTAAGAGTTGCTGCGGAAAAGGAGGTTTGGATGGTTGCTAGGATGTGCCAATTGGAGAACAAAATTATTGCTGTTGGTGAACCTTCATATCGTGCTCGGAGAAGTAAAATAAAAAAAGTGCGAGAAGGATTGGAAATTTCCCTCAAGCAACGGATAGAACTCATAGACAGCTATGCAAAAATATCTTCAATGATTGAAATTGAAGTTGAAATGGACTCTGACGTTCTTGCTGCAGAAGCGGCAAGCAGTATGGAAAGAGTCGCCGAACAAATCCAACAAATCATGGAGATAGAAAATCTAGAAGAGAGTTGGAGGCTTCAAGCGGAAGCCAATGATGAAGCAGAAAGACTTCTCAGCGCTCAACCCATGTCAGAAGAGCAGGTTTAA 1710 44.62 MTLNLSCPWLVRLSLPSPQIVTLNSFAFSPSLHCSNSVVFDSFSRSPKLNASLKESGSAASAETPVSELLDDDLLGKISGAQDSNDVLSMIANKTQKNEGVVSVSDCCLIISAALDRNNPELALSVLYAMRSSVDLASFNQNSPYLGRWMWSKPDVHVYTMLIQGLAASLRVSDATKMIQNICRVGLSPGEEVPFGKVVRCPSCMVAVAVAQPQNGIQIVSCAQCRYQYELISGDIISIQSEEISMDVPAWKRGLRFLKLMKQSVPAAVHSIVVQTPSGAGRTHKFATETVDLPAQQGERVTIASASPANLARGIGPFKFSPKAPNFYHGEPLCLTNHKDGRESLLLRAPTKEGNSSLLNPSVLFPLLVLLASGDAASGVIDPSLPQLLTVAGVSSLAAGAIFNTFVLPQLNQLPQKKVDVVAIKQQLLSQYDMLQSRIMDLRVAAEKEVWMVARMCQLENKIIAVGEPSYRARRSKIKKVREGLEISLKQRIELIDSYAKISSMIEIEVEMDSDVLAAEAASSMERVAEQIQQIMEIENLEESWRLQAEANDEAERLLSAQPMSEEQV 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 512669 517821 - Bpe020880.1 Bpe07g00068 105837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00068 569 Gene3D Tetratricopeptide repeat domain 73 201 IPR011990 GO:0005515
Bpe07g00068 569 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 33 568 - -
Bpe07g00068 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00068 - - - jre:108987137 791.956
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g142 . . Bda06g00150 . . Bpe07g00068 . . . . . . . . . Cpe14g00458 . . . . . . . . Cla07g01097 Cam07g1401 . Cco07g1239 . Cmu07g1140 . . . . . . . . . . . . . . . . Bma12g00611 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00665 Chy07g01147 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010485 1 5 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00068 Bpe_Chr07 FPKM 22.261126 24.448151 6.214563 5.519765 18.013882 17.25547 19.352854 6.352975 6.719588 6.950587