Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00071 CTCTCGCCGGCAAAAATGGCTGCGTCCGGATTCTTCTTTCTCTTGTTTATCTGCTTTATTCCTCGCACAGTAACGAGCGAGATTATCTGCAAAGAATCATCCTGCCTGCTAGGATTTGAGCCGGCGGTTCATTTCCCTTTCCGATTAAACTATACTAATCAAATTCGCTGTGGCTACGGACCTGATTTCGTTCTTTCATGCGACGACCGGCGCCGTACAACTTTGAATCTCCCATCATCCGGACGATTCGTCGTCACTGATATTGATTACTTGTCCCTAACATTGTCGATAGACGATCCCGACGAATGCCTTCCGAGAAGGTTCCTTCAAAATTTCAGCGTCGCCAACTCGCCGTTCCTGGTTGATAGTTTCGAAAGCATAACGTTCGTCAACTGTTCAAATACTGATGAAGCGACTCCATATTTCCTGTCTATACCTTGCCTCAGCGGCGATAACTTCAGGGTCAAGGCAACGAGAACAGTTTTTAATGGTGAAATTTCTTCTATTCCACCATCATGCCGGTTGATTTCGACGGTTACGGTTCCGATTACGTGGGGCAGTCAATACTTCGGGATTAATGCATATATCAAGATACGTTGGACTGATCCTGATTGTAGATCTTGTGAAAGGAGAGGTGGAGATTGTGGATTCATAAGCAGTTCGGGCCTCAATATTGGATGCTCTAATCTTCCAACTAGCGGTCTTCCGAGGGCGGCCAAGTACGGCATAATCTTAGGCGCAGTTATACCTGGGTTTCTCTTCATCATCGGCCTGTGTTCTTGCATATGTGCCAAGATGAGACTGAGGGCCTATCTGGACAGAAACACGTCAGTCTCTGGCTCCGTTGTAGCACTGGGCTCCGTCACGGTGGTAGGTCTTGACGAACCGACGATCCAGTCATACCCAAAGACTATGCTCGGCGCAAGTCGTAGATTACCAAAGCCTAACGACAGCACTTGCTCAATATGCTTGTCCGATTACCAACCCACGGAAACGCTAAGGACCATCCCTGACTGCGGACACTACTTCCACGCCTCGTGCATCGATGAGTGGCTTAAAATGAACGCCACGTGTCCATTGTGTCGGAATTCGCCCGAGGGGTCGTCGTCCTCTCACACTTCCCATTCCTCTCCGACGTCGACTTCGTCTTTGCTGTCCTATTCCTCCACTTAG 1173 48.76 LSPAKMAASGFFFLLFICFIPRTVTSEIICKESSCLLGFEPAVHFPFRLNYTNQIRCGYGPDFVLSCDDRRRTTLNLPSSGRFVVTDIDYLSLTLSIDDPDECLPRRFLQNFSVANSPFLVDSFESITFVNCSNTDEATPYFLSIPCLSGDNFRVKATRTVFNGEISSIPPSCRLISTVTVPITWGSQYFGINAYIKIRWTDPDCRSCERRGGDCGFISSSGLNIGCSNLPTSGLPRAAKYGIILGAVIPGFLFIIGLCSCICAKMRLRAYLDRNTSVSGSVVALGSVTVVGLDEPTIQSYPKTMLGASRRLPKPNDSTCSICLSDYQPTETLRTIPDCGHYFHASCIDEWLKMNATCPLCRNSPEGSSSSHTSHSSPTSTSSLLSYSST 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 533142 534941 + Bpe020883.1 Bpe07g00071 105840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00071 390 ProSiteProfiles Zinc finger RING-type profile. 320 362 IPR001841 -
Bpe07g00071 390 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 12 386 - -
Bpe07g00071 390 Pfam Wall-associated receptor kinase galacturonan-binding 30 98 IPR025287 GO:0030247
Bpe07g00071 390 SMART ring_2 320 361 IPR001841 -
Bpe07g00071 390 MobiDBLite consensus disorder prediction 368 390 - -
Bpe07g00071 390 CDD RING-H2_PA-TM-RING 319 362 - -
Bpe07g00071 390 SUPERFAMILY RING/U-box 312 364 - -
Bpe07g00071 390 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 12 386 - -
Bpe07g00071 390 Pfam Ring finger domain 319 362 IPR001841 -
Bpe07g00071 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 366 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00071 - - - bhj:120071243 340.887
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00694 Bpe07g00071 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00071 Bpe-Chr7:533142 Bpe15g01388 Bpe-Chr15:21805636 2.71E-33 dispersed
Bpe05g00562 Bpe-Chr5:19764580 Bpe07g00071 Bpe-Chr7:533142 3.35E-14 transposed
Bpe05g00694 Bpe-Chr5:20561452 Bpe07g00071 Bpe-Chr7:533142 8.87E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g133 Blo02g01150 . Bda06g00147 . Bpe05g00694 Bpe07g00071 . . Cmo06g01042 Cmo16g00596 . . . . . Cpe14g00461 . . . . . . . . . . . . . . . Cone8ag0244 . . . . . . . . . . . . . . Bma12g00608 . . . . Cma16g00544 Car06g00858 . . . . . . . . . . . . . . . . . . Csa04g00658 Chy07g01153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008451 2 1 1 1 2 1 2 1 1 1 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00071 Bpe_Chr07 FPKM 26.372093 35.540649 36.591351 37.043415 21.28754 18.640337 28.367571 19.893547 17.732006 14.149499