Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00078 ATGCATGTAGATATAGAGCATAATGTAACGAGGATCTTGAAGCTTATTAAGAATGGAGGCCAAGGGAAGAAAGGGAAATTTCAGAAGGATGCAAAAAAAGAAGCTGAACTCGTTGGGCTCGTCGAGGATTTCTACCAACGGTACCGATCACTTCATTCACTGTACGATCATCTCAAACGAGATTCAGAAGAAAGAGTCATTCCTGCAAGAACAGAGAGGGAAAAACCTTCCTCGTCTACTCCCAGCTCTGATTCGGAATATTTTTCTTCTGAGGAAGTTAACTCAAACAACAGCGGTTTGGATTGCAATGACCAGACGGCGGACAAGAGTTCAAAGCAAGAAGTTGAGACTCGGAATTGTGTGGAGATTAGAGATCTGAAACTGGAGGTTAATTCCTTACGTGATTTGAGAATTGAACTGGCAAAACAATTGGTAGAAAGGAACCAAAAGTTGGAGTCTACGCTCAGAGAAAAAGATGAATTAGATCAGAGAAAGAATCACGAGGTTTCTGAAATTCTGAGACTGGTGGAAGGGTTGAAAGAGGAAGTGGCGGAGAAAACGAAGGAAGCACAGAGAGAACAGGAAGAGAAAGCGAGGTCTCTTGCTCGAATTACGGAATTGGAAATGGAGAAAGTCGACGATATTAATCGACGCAAAGAGGAAGAAAATGAGAAATTGCAGAAAAAGAATTCGGAACTGGAGAGACTGTTGACGAACAAAGGAGATGAACTTTCTTCGCTAAAAAAGAGCTATTCGTCTAAGGAAGTTGAAGCGTCAACTCAGATTACTCAACTCGTGAAACATGTTCAAAGTCTGAAAGAAGTGTTGGATTCTTTAGAGGATCGGAAAAGGAAAGAGAAACAAGAATTTTCTCAAAGAATTTGTCAAATGGAAAACGAGAAAACCAAATTAAACAGCAAGATCTCCGATCAGCAGAAGAAATTGAAAGAACAAGAAGAAATGATAGAGAAATGGAGAAAAGAGAGCAAAGAATCCAAAGCCTTAGTTGCAGAGAGGAAGATGGCGGAAATGGCAGAAGAATTTCGCAAAAAAGTGGAAGCCAACATAAGGATTTTATATCAGAGGATTTTGGTGGCCGAACAGCTACAAGCAGAAACCAAAAACAGCTACAGAAAAAGAGACATCAGCCATGAACAAGAAACGCAAGCTCTGCTTAAAAAATTCATCCCTGAAATAGGAGAGAAAATGGATCAAACAGCACATAATTTCGAAGAACAAACAGGTAAAATTTTGAACCAAATTTCCAGATCCTCAAACGAGCTTCAAATGGCGAAACGCAGAATTTCAGAGCTAAAGAACGAGTTGAATCGTCTGGGTGCTGTACTGAACGAAAAAGAAGAGCAAGAATTGCAGCTGAGAGAGAAGGTATGGAAGTTAGAGGCAAAGGTAGGCAAAGAGGGAGGAGAGAAGCTGAATTTGATGAACGACATAGCCCGGCAGGAGAGAAAGGCGGGAGAATTGGAGAAGAAAGTGAGAGAGAAGGAAGAAGGAATGATAAGAGTGGCAGAGGAGAAGAGGGAAGCCATCAGACAGCTCTGTATCTCCATCGACTACCATCGTAGCAGTTACGATCAGCTCAGGGAAGTGTTTTTGAAAAATAATCTAAAAAAATAA 1635 40.92 MHVDIEHNVTRILKLIKNGGQGKKGKFQKDAKKEAELVGLVEDFYQRYRSLHSLYDHLKRDSEERVIPARTEREKPSSSTPSSDSEYFSSEEVNSNNSGLDCNDQTADKSSKQEVETRNCVEIRDLKLEVNSLRDLRIELAKQLVERNQKLESTLREKDELDQRKNHEVSEILRLVEGLKEEVAEKTKEAQREQEEKARSLARITELEMEKVDDINRRKEEENEKLQKKNSELERLLTNKGDELSSLKKSYSSKEVEASTQITQLVKHVQSLKEVLDSLEDRKRKEKQEFSQRICQMENEKTKLNSKISDQQKKLKEQEEMIEKWRKESKESKALVAERKMAEMAEEFRKKVEANIRILYQRILVAEQLQAETKNSYRKRDISHEQETQALLKKFIPEIGEKMDQTAHNFEEQTGKILNQISRSSNELQMAKRRISELKNELNRLGAVLNEKEEQELQLREKVWKLEAKVGKEGGEKLNLMNDIARQERKAGELEKKVREKEEGMIRVAEEKREAIRQLCISIDYHRSSYDQLREVFLKNNLKK 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 574121 576397 - Bpe020891.1 Bpe07g00078 105847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00078 544 Coils Coil 169 243 - -
Bpe07g00078 544 Coils Coil 301 347 - -
Bpe07g00078 544 MobiDBLite consensus disorder prediction 65 116 - -
Bpe07g00078 544 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 1 62 IPR011684 GO:0003779
Bpe07g00078 544 Coils Coil 262 289 - -
Bpe07g00078 544 MobiDBLite consensus disorder prediction 215 234 - -
Bpe07g00078 544 Pfam KIP1-like protein 4 56 IPR011684 GO:0003779
Bpe07g00078 544 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 120 542 - -
Bpe07g00078 544 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 3 108 - -
Bpe07g00078 544 Coils Coil 477 504 - -
Bpe07g00078 544 PANTHER COP1-INTERACTIVE PROTEIN 1 3 108 - -
Bpe07g00078 544 PANTHER COP1-INTERACTIVE PROTEIN 1 120 542 - -
Bpe07g00078 544 Coils Coil 123 164 - -
Bpe07g00078 544 Coils Coil 421 469 - -
Bpe07g00078 544 MobiDBLite consensus disorder prediction 73 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00078 - - - csv:101207367 339.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00078 Bpe-Chr7:574121 Bpe05g00682 Bpe-Chr5:20451148 1.66E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g108 . . Bda06g00139 Bda08g00482 . Bpe07g00078 . . . Cmo16g00608 . . . . . Cpe14g00472 . . . . . . . . Cla07g01412 Cam07g1514 Cec07g1610 Cco07g1570 Clacu07g1502 Cmu07g1472 Cre07g1849 . . Cone6ag0838 . . . . Cme07g01580 . . . . . . Bma05g00855 Bma12g00049 . . . . Cma16g00559 . . . . . . . . . . . . . . . . . . . Csa04g00641 Chy07g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001955 2 3 1 4 1 2 2 2 2 2 1 2 3 2 2 3 2 3 2 2 2 2 2 2 2 2 2 5 3 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00078 Bpe_Chr07 FPKM 11.728903 13.313127 21.7556 20.131662 73.902031 66.652542 76.420959 30.883518 30.084913 28.655087