Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00080 ATGACTTCCACGACCAAGTTCAGCCGGCATCTCAACCAGTTTAAACTCATTTCCCGGACGGAAATTGGACCTAAAGTTGTGAGAATATTAGTCACTGATGGCGACGCTACTGATTCCTCCAGTGATGAAGAAAGACTGTTTTATCCTCGTAGAAGGATTAAGAAGTTTGTGAATGAAATAACAATCGAGTCGTCGACTTCGAAGATGGAAGGAGGAGTTTGTCGGTCCAAACCAACGAGAGCTCGCCGGAAAAAGTCAACCGGAAAGGTAGCGATCGGTCGCGGGTCAATGAAGCCGCATACCGGAAAGAAATTTCGCGGTGTCAGGCAGCGACCGTGGGGAAAATGGGCAGCCGAAATCAGAGACCCGCTGCAACGTGTCCGTCTCTGGTTGGGGACCTTTGACACTGCAGAAGAAGCTGCCATGGTTTATGACAACGCCGCCATTAAACTCCGAGGCCCAGACGCTCTCACAAATTTTGTCACTCCGAAGCGTTTGCTGCCGGAAGTTTTTGGTGGTTACAACTCCGCCGACGAGTCAAACAGCAACCATCCCTCTCCGACTTCTGTTCTCCGTCGCTGCCTCTCTAATTCCAGCGAAGAAGCAGAATATCTGAGCCGTTTAACTCAACCAACTAAGAAAGAGACGGAGGATGTTAACGACGGCCGAGATATTAGCGAAGATTTCGCTGCGTCGGAGAATTTTCCCGACTTTCCGGATTTCGAAACGTTGATTCCTTCGGATATTTTTGATTTTCAAAGTTCAGCACCAAGTATCTTCGACGAAACCTTTCTGCAACACAACATTTGGGACATGTCCAACGAAAAATCACTTCTTAGTTCGAGTGAAGAAATCAGATTCGGGTCCTCCCCGTGGCACGAGCAAGACTCTTTCCTGTTCCAAGACATCGGCGACCTTTTCGGGTCGGATCCTCTAATCGCGCTATAG 948 48.73 MTSTTKFSRHLNQFKLISRTEIGPKVVRILVTDGDATDSSSDEERLFYPRRRIKKFVNEITIESSTSKMEGGVCRSKPTRARRKKSTGKVAIGRGSMKPHTGKKFRGVRQRPWGKWAAEIRDPLQRVRLWLGTFDTAEEAAMVYDNAAIKLRGPDALTNFVTPKRLLPEVFGGYNSADESNSNHPSPTSVLRRCLSNSSEEAEYLSRLTQPTKKETEDVNDGRDISEDFAASENFPDFPDFETLIPSDIFDFQSSAPSIFDETFLQHNIWDMSNEKSLLSSSEEIRFGSSPWHEQDSFLFQDIGDLFGSDPLIAL 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 593198 594145 - Bpe020893.1 Bpe07g00080 105849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00080 315 MobiDBLite consensus disorder prediction 79 108 - -
Bpe07g00080 315 Pfam AP2 domain 104 153 IPR001471 GO:0003700|GO:0006355
Bpe07g00080 315 SMART rav1_2 104 167 IPR001471 GO:0003700|GO:0006355
Bpe07g00080 315 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Bpe07g00080 315 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 234 - -
Bpe07g00080 315 CDD AP2 103 160 IPR001471 GO:0003700|GO:0006355
Bpe07g00080 315 ProSiteProfiles AP2/ERF domain profile. 104 161 IPR001471 GO:0003700|GO:0006355
Bpe07g00080 315 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Bpe07g00080 315 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Bpe07g00080 315 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF4-LIKE 23 234 - -
Bpe07g00080 315 SUPERFAMILY DNA-binding domain 104 161 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00080 Bpe-Chr7:593198 Bpe12g00369 Bpe-Chr12:8949352 4.48E-62 dispersed
Bpe11g00644 Bpe-Chr11:4960790 Bpe07g00080 Bpe-Chr7:593198 6.65E-94 wgd
Bpe05g00678 Bpe-Chr5:20437710 Bpe07g00080 Bpe-Chr7:593198 4.89E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21598 PF00847 AP2 1.30E-13 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00080 - - pvy:116145351 305.834