Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00089 ATGTTGAGCTCCGCTTGCTCCCACTCTCTCATCCAACGTCCTTCTCTTCACCCGTCCCTTCCTCGAATTAGGGTTCCCTCTCTTGCCCGACCTGCCTCTTCTTCTCCGATTACGCGAAGTATTCGCAGCTTTGACTCCCATTCTAGACTCTTTAAACTCAAGTGGAGAATTTCATGCTTTAGGCGTGAGGATTTTTCTTCAGAAGCATCTAAACCTGAAGCCTTTGAACAAAGTTCTCGAGAGGAATCAGCGAAACCTGAAGTTGACAAGCCTACCAATGTTAAAAAAGATTGGACCTTCGTACTTCGCAAGGTTGCAGATTTTGTGTTTAGGGCTATTGGCACCCGCTGGACTGTACCATGGACAGCAGAAACTATAGTACAAGTTATGCTTCTCTGGATTGGTGCATTTTGGTTCATAGGGTCTTGGATGGTTCCATTTGCAGCACATATGGCAGGTTTCAGCAGGGATTCTCTTACGTTCAGAGGTCAAGCCTTGTTCAGCCTCGTGACTGATGTTGCGGAAGGCCTAGCTGGCATCGCGATTCTTCATCGCTGCCTGTCCAGATTTTTCCCTCTTCCAAATGATTGGTTCAAGTTTAGTTTAAAAGGAAATTGGCAATTTGATGTTGTCTTGGGATGCCTAATGTTTCCTCTTGTCAACCGGCTCTCCCAATTCAACCTCGACCTGCTTCCTCTCTTGCCTTCCACCCCAGTCACCCTATCCAGTGTCGAGCAGTCGATAATGGCTCGAGATCCGGTGGCAATGGCATTATACGCCATAGTAGTTTCAATCTGCGCTCCTGTTTGGGAGGAGATAGTTTTCAGGGGTTTCCTTCTTCCTTCTTTAACCAAGTACATGCCCGTTTGGTGTGCCATACTGATGAGCTCAGTCGCGTTTGCTCTAGCTCATTTCAACGTGCAAAGAATGCTGCCTCTTATCTTCCTCGGGGTGGTGATGGGGCTTATTTTTGCAAGATCGAGGAATCTCTTACCGTCAATCCTCTTGCACAGCCTTTGGAATGGTTTTGTGTTTTTAGATTTGATGAAATAA 1053 46.53 MLSSACSHSLIQRPSLHPSLPRIRVPSLARPASSSPITRSIRSFDSHSRLFKLKWRISCFRREDFSSEASKPEAFEQSSREESAKPEVDKPTNVKKDWTFVLRKVADFVFRAIGTRWTVPWTAETIVQVMLLWIGAFWFIGSWMVPFAAHMAGFSRDSLTFRGQALFSLVTDVAEGLAGIAILHRCLSRFFPLPNDWFKFSLKGNWQFDVVLGCLMFPLVNRLSQFNLDLLPLLPSTPVTLSSVEQSIMARDPVAMALYAIVVSICAPVWEEIVFRGFLLPSLTKYMPVWCAILMSSVAFALAHFNVQRMLPLIFLGVVMGLIFARSRNLLPSILLHSLWNGFVFLDLMK 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 653025 655199 + Bpe020902.1 Bpe07g00089 105858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00089 350 PANTHER CAAX AMINO TERMINAL PROTEASE 32 348 - -
Bpe07g00089 350 PANTHER - 32 348 - -
Bpe07g00089 350 Pfam Type II CAAX prenyl endopeptidase Rce1-like 257 342 IPR003675 GO:0004222|GO:0016020|GO:0071586
Bpe07g00089 350 MobiDBLite consensus disorder prediction 71 90 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00089 K07052 K07052; CAAX protease family protein - cit:102608238 528.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00089 Bpe-Chr7:653025 Bpe15g00683 Bpe-Chr15:17497307 3.81E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g65 . Blo03g00231 Bda06g00126 . . Bpe07g00089 . . . . . . . . . . Cpe05g00630 . . . . . . . . . . . . . . . Cone12ag0274 . Cone9ag0820 . . . . . . . . . . . . . Cmo02g01113 Cmo15g01113 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005068 1 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 1 2 1 1 4 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00089 Bpe_Chr07 FPKM 19.213736 19.760031 23.101191 22.315138 29.148853 29.597454 32.483555 34.413017 35.978416 35.29887