Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00095 TTGTGGAACTGGATTTGGAGGGTTTTGATGGATGATTCTGTACTTGACGATATTATAAACCGGCTTATGAAGGCAAAGGATGGCCGCAATACAAAACAGGTGCAGCTCACTGACACTGAAATCAAGCAAATTTGTGCTAAGTCGAAGGAGATTTTTCTCAGCCAGCCTAATCTTCTTGAGCTCGAAGCTCCGATAAAGATTTGTGGTAATGAATCTGAAATGGATTTTCTGCCTATTCAATCCTTAATATTTTGTGCATGGTATGTTTTGACAGGAGATATTCACGGTCAATATTCTGATCTGTTGCGGCTGTTTGAATATGGTGGCTTTCCACCTGAGGCGAATTATTTATTCTTAGGGGATTATGTAGATCGTGGTAAACAGAGCATTGAAACCATCTGCCTCCTCCTTGCATACAAAATAAAATACAAGGAGAATTTCTTTCTTTTGAGGGGCAATCATGAATGTGCTTCCATCAATCGAATATATGGATTCTATGATGAATGCAAAAGGAGATTTAGTGTTCGTATTTGGAGAACATTTACTGAATGCTTTAACTGTCTGCCGGTTGCTGCCCTAATAGATGAGAAGATTCTTTGCATGCATGGTGGACTGTCACCTGATTTGAAGAACTTGGATCAGATTAGGAAACTTGCTCGCCCTGCTGATGTGCCAGATCAGGGCCTTCTCTGCGATCTTCTATGGTCAGATCCTGATAAAGATATTGATGGCTGGGAAGAGAATGACAGGGGTGTATCATTTACATTTGGCTCTGACAAGGTTACTGAATTTCTTCAAACACACGACCTTGATCTCATTTGTCGAGCTCACCAGGTTGTGGAAGATGGCTACGAGTTTTTTGCTAAGCGGCAGCTTGTAACTATATTTTCAGCACCGAATTACTGTGGGGAGTTTGACAATGCTGGTGCTATGATGAGTGTGGATGATACATTGACATGCTCCTTCCAGATTCTCAAAGCTTCAGAGAAGAAATTAAGATTAGGACAGAGCAATAACGCCCCAAGGCCTGGAACTCCACCTCACAAGGTACAAAATTTTTTTTGCGGTGGATTAGATCAATTTTTTTTTTCCTTAAATGATGAGATAAAAAAAAATAACGGATTGCTATATTATTTCGAGATTGAATCCTTCTGA 1155 40.17 LWNWIWRVLMDDSVLDDIINRLMKAKDGRNTKQVQLTDTEIKQICAKSKEIFLSQPNLLELEAPIKICGNESEMDFLPIQSLIFCAWYVLTGDIHGQYSDLLRLFEYGGFPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRFSVRIWRTFTECFNCLPVAALIDEKILCMHGGLSPDLKNLDQIRKLARPADVPDQGLLCDLLWSDPDKDIDGWEENDRGVSFTFGSDKVTEFLQTHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGAMMSVDDTLTCSFQILKASEKKLRLGQSNNAPRPGTPPHKVQNFFCGGLDQFFFSLNDEIKKNNGLLYYFEIESF 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 686350 689062 + Bpe020909.2 Bpe07g00095 105864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00095 384 SUPERFAMILY Metallo-dependent phosphatases 14 333 IPR029052 -
Bpe07g00095 384 PRINTS Serine/threonine phosphatase family signature 149 173 IPR006186 GO:0016787
Bpe07g00095 384 PRINTS Serine/threonine phosphatase family signature 87 114 IPR006186 GO:0016787
Bpe07g00095 384 PRINTS Serine/threonine phosphatase family signature 212 239 IPR006186 GO:0016787
Bpe07g00095 384 PRINTS Serine/threonine phosphatase family signature 291 307 IPR006186 GO:0016787
Bpe07g00095 384 PRINTS Serine/threonine phosphatase family signature 269 289 IPR006186 GO:0016787
Bpe07g00095 384 PRINTS Serine/threonine phosphatase family signature 183 209 IPR006186 GO:0016787
Bpe07g00095 384 PRINTS Serine/threonine phosphatase family signature 116 143 IPR006186 GO:0016787
Bpe07g00095 384 SMART pp2a_7 36 329 IPR006186 GO:0016787
Bpe07g00095 384 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP1 ISOZYME 3 10 71 - -
Bpe07g00095 384 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP1 ISOZYME 3 88 351 - -
Bpe07g00095 384 CDD MPP_PP1_PPKL 14 326 - -
Bpe07g00095 384 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 71 - -
Bpe07g00095 384 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 88 351 - -
Bpe07g00095 384 Pfam Calcineurin-like phosphoesterase 89 279 IPR004843 GO:0016787
Bpe07g00095 384 Pfam Serine-threonine protein phosphatase N-terminal domain 15 62 IPR031675 -
Bpe07g00095 384 ProSitePatterns Serine/threonine specific protein phosphatases signature. 150 155 IPR006186 GO:0016787
Bpe07g00095 384 Gene3D - 7 337 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00095 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] - cit:102611078 584.334
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00660 Bpe07g00095 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00095 Bpe-Chr7:686350 Bpe09g00665 Bpe-Chr9:15284581 0 dispersed
Bpe05g00660 Bpe-Chr5:20340854 Bpe07g00095 Bpe-Chr7:686350 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g50 Blo02g01122 Blo03g00225 Bda06g00121 Bda08g00504 Bpe05g00660 Bpe07g00095 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0815 Cone9ag0815 . . . . . . . . . . Bma05g00834 Bma12g00065 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000122 12 6 9 10 10 5 9 5 6 6 6 6 9 6 6 8 6 16 7 6 6 6 6 6 6 6 5 12 7 7 221
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00095 Bpe_Chr07 FPKM 30.714752 30.349377 29.063599 35.85033 35.945885 35.792091 37.446053 34.126015 31.301996 33.567078