Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00098 CGTCTTCTTCGAGGGGTTTTCTTTGCAGAAATGGTTGGATTGTCGAAGATGGCTACAGGCAGTGGCCATGGTGAAGATTCTCCTTATTTCGATGGCTGGAAGGCGTACGATAGCGACCCTTTTCATCTTAAACTGAATCGTCGTGGAGTTATCCAGATGGGTCTCGCAGAAAATCTGCTATCAATGGATTTGGTCCAAGAGTGGCTCTTGAATAACCCACAAGCCTCCATTTGCAGTGCAGAAGGAGTGAATGAGTTCAGCGAGAAGGCTATTTTCCAGGATTACCATGGCTTGCCAGAGTTCAGAAACGCTGTGGCTAAATTCATGGGGAGGACGAGGGGGGATAGGGTGAGCTATGATCCTGATCGGATTGTGATGAGCGGAGGGGCGACCGGAGCTCATGAAATGCTGGCTTTCTGTCTTGCTAATCCCGGGGAAGCTTTTCTTGTTCCTACTCCTTATTATCCTGGATTCGATCGAGATTTAGGATGGAGAACAGGAGTAAAACTTCTTCCGGTCGTCTGCGAAAGCTCAAACAACTTTAAAATAACAACAAAATCTCTCGAAACAGCCTTGGAAAAAGCTCAAGAATCCAACGTCAAAGTCAAAGGCTTGCTCATAAACAACCCCTCAAATCCACTCGGTACGGTTTTAGACTCAGAAACCCTCAAAAACCTTGTCACCTTCGTCAACCAAAACAACATCCACCTAATCTGCGACGAAATCTACGCAGCCACTGTCTATTCCCGACCCAACTTCATCAGCATCTCAGAACTAATCGAAGAAGATCCCCACTGCAACAGAAATCTCATTCACGTAGTTTACAGTCTCTCAAAAGACATGGGATTTCCAGGCTTTAGAGTTGGAATCGTGTATTCTTACAACGACCAAGTCGTTCAGATAGCCAGAAAGATGTCCAGTTTCGGCCTTGTTTCAACCCAAACCCAACACTTGATAGCCGGAATGCTGTCGGACGACGAGTTCATCGACTCCTTCATCGGAGAAAGCGGCCGGAGATTAGGAGCCAGACAGAAAGTGTTCACCAAAGGGCTAGCCCAGGTGGGAATAGAGTGCTTGAAAAGCAACGCCGGGCTATTTCTATGGATGGATTTACGTCATCTCTTGAAAGAGAAGACGTTCGAAGCAGAAATGGCGCTGTGGAGACTGATAATCAACGAGGTAAAGCTGAACGTTTCGCCTGGTTCTTCGTTCCATTGCTCCGAGCCAGGCTGGTTCAGGATTTGCTTTGCGAACATGGAAGAAGAAACCATGGGAGAAGCTCTGAGGAGAATAAGAATGTTTGTTGTCCAAAACAAGGAGGTGAAAACGAAGAAGAGACAGCAGTTTTGGTGGCAGAGTAATCTGGATCAGCTTCTGCTTTCTCCCAGGAGATTGGACGACGTACTCATGTCGCCTCATTCCCCCCTTCCTCCCTCGCCTCTCGTTCGAGCCGCCACATAG 1461 47.5 RLLRGVFFAEMVGLSKMATGSGHGEDSPYFDGWKAYDSDPFHLKLNRRGVIQMGLAENLLSMDLVQEWLLNNPQASICSAEGVNEFSEKAIFQDYHGLPEFRNAVAKFMGRTRGDRVSYDPDRIVMSGGATGAHEMLAFCLANPGEAFLVPTPYYPGFDRDLGWRTGVKLLPVVCESSNNFKITTKSLETALEKAQESNVKVKGLLINNPSNPLGTVLDSETLKNLVTFVNQNNIHLICDEIYAATVYSRPNFISISELIEEDPHCNRNLIHVVYSLSKDMGFPGFRVGIVYSYNDQVVQIARKMSSFGLVSTQTQHLIAGMLSDDEFIDSFIGESGRRLGARQKVFTKGLAQVGIECLKSNAGLFLWMDLRHLLKEKTFEAEMALWRLIINEVKLNVSPGSSFHCSEPGWFRICFANMEEETMGEALRRIRMFVVQNKEVKTKKRQQFWWQSNLDQLLLSPRRLDDVLMSPHSPLPPSPLVRAAT 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 718823 720891 + Bpe020912.1 Bpe07g00098 105867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00098 486 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 14 446 - -
Bpe07g00098 486 CDD AAT_like 92 432 - -
Bpe07g00098 486 Pfam Aminotransferase class I and II 51 431 IPR004839 GO:0009058|GO:0030170
Bpe07g00098 486 Gene3D Aspartate Aminotransferase, domain 1 39 430 IPR015422 GO:0003824
Bpe07g00098 486 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 14 446 - -
Bpe07g00098 486 SUPERFAMILY PLP-dependent transferases 24 434 IPR015424 -
Bpe07g00098 486 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 276 289 IPR004838 GO:0003824|GO:0009058|GO:0030170
Bpe07g00098 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 270 294 - -
Bpe07g00098 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 86 102 - -
Bpe07g00098 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 123 143 - -
Bpe07g00098 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 199 223 - -
Bpe07g00098 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 53 79 - -
Bpe07g00098 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 302 325 - -
Bpe07g00098 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 235 258 - -
Bpe07g00098 486 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 145 166 - -
Bpe07g00098 486 Gene3D - 73 325 IPR015421 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00098 K20772 ACS1_2_6; 1-aminocyclopropane-1-carboxylate synthase 1/2/6 [EC:4.4.1.14] - jre:108983882 722.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00927 Bpe-Chr4:6202634 Bpe07g00098 Bpe-Chr7:718823 0 dispersed
Bpe07g00098 Bpe-Chr7:718823 Bpe13g00144 Bpe-Chr13:8934851 0 dispersed
Bpe10g00810 Bpe-Chr10:14189984 Bpe07g00098 Bpe-Chr7:718823 1.84E-22 dispersed
Bpe07g00098 Bpe-Chr7:718823 Bpe15g00284 Bpe-Chr15:14322780 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g40 Blo02g01120 Blo03g00222 Bda06g00119 . . Bpe07g00098 . . . Cmo16g00632 . . . . . Cpe14g00493 . . . . . . . . Cla07g00752 Cam07g0805 Cec07g0867 Cco07g0843 Clacu07g0787 Cmu07g0794 Cre07g1146 . . . Cone9ag0808 . . . Cme07g01616 . . . . . . . Bma12g00069 . . . . Cma16g00582 . . . . . . . . . . . . . . . . . . . Csa04g00609 Chy07g01202 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001626 1 2 3 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 5 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00098 Bpe_Chr07 FPKM 2.756646 0.0 13.978447 13.405298 33.193806 36.310131 33.318729 3.744117 4.937272 4.845523