Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe07g00113 GTTAAGCTTCTGCATTATAAAATGGAAGAAGATAGTCAAATCAAGAGAGAAAGTTATGCTTCTAATATTCACCTCATACGAGAATCACATTTTCGCATCAAGTCTTTCATACATCAAACTCCAGTGCTGTCCTCTGAATCCATTAATGCAGCTTCAGGAAAGCAACTATTTTTTAAATGTGAATGTTTTCAGAAGGGTGGATCGTTTAAATTCAGAGGAGCCTGCAATGCTGTATTTTCGCTAGACGATCACGAGGCCGCTAAAGGAGTTGTAACTCACAGCAGTGGTAACCATGCAGCAGCATTAGCTCTGGCTGCAAAACTTCGAGCAATTCCTGCCTACATTGTTATTCCAAAAAACGCTCCAAAATGCAAAGTTGAAAATGTGATCCGATATGGTGGACAGATTATTTGGAGTGAGCCTACGTTGCAGTCCAGGGAGAGTGTTGCTTCCAAGGTTGTGGAAGAAACTGGTGCAATTCTCTTACATCCATTCAATGATCAACGCATAATAAGTGGGCAAGGCACCATTGTGTTAGAGCTTTTAGAGCAAGTACAACAAATCGACACCCTTATCGTTCCCATTAGTGGAGGTGGTTTGATATCAGGAGTAGCACTGGCTGCAAAGTCTATCAACCCTGCTATTCACATTTTGGCCGCCGAACCTCGGGGAGCTAACGATGCAGCACAGTCCAAAGAGGCTGGTAGAATAATCACTTTGCCCGAGACTAACACCATAGCTGATGGTCTTCGAGCTTTCCTTGGTGATCTTACATGGCCAATTGTTCGAGATCTTGTCGATGATGTAATAACTGTGGAAGACAAGGATATAATCGAAGCCATGAAACTCTGCTTCCAGATACTAAAGATTGTTGTCGAACCCAGTGGAGCGATTGGCCTTGCAGCTGTCATATCAGATAATTTCAAGAAACACCCGATTTGGAAGAATTGCAACAGAATAGGAATTATATTTTCTGGAGGGAATGTTGATCTTGGAGTCTTGTGGGATTCATTTAAAATTTGA 1023 42.03 VKLLHYKMEEDSQIKRESYASNIHLIRESHFRIKSFIHQTPVLSSESINAASGKQLFFKCECFQKGGSFKFRGACNAVFSLDDHEAAKGVVTHSSGNHAAALALAAKLRAIPAYIVIPKNAPKCKVENVIRYGGQIIWSEPTLQSRESVASKVVEETGAILLHPFNDQRIISGQGTIVLELLEQVQQIDTLIVPISGGGLISGVALAAKSINPAIHILAAEPRGANDAAQSKEAGRIITLPETNTIADGLRAFLGDLTWPIVRDLVDDVITVEDKDIIEAMKLCFQILKIVVEPSGAIGLAAVISDNFKKHPIWKNCNRIGIIFSGGNVDLGVLWDSFKI 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 817808 819580 + Bpe020926.1 Bpe07g00113 105882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe07g00113 340 Pfam Pyridoxal-phosphate dependent enzyme 35 325 IPR001926 -
Bpe07g00113 340 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 39 338 - -
Bpe07g00113 340 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 11 57 - -
Bpe07g00113 340 PANTHER - 39 338 - -
Bpe07g00113 340 PANTHER - 11 57 - -
Bpe07g00113 340 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 26 332 IPR036052 -
Bpe07g00113 340 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 61 74 IPR000634 GO:0006520|GO:0030170
Bpe07g00113 340 CDD Thr-dehyd 26 330 - -
Bpe07g00113 340 Gene3D - 32 330 IPR036052 -
Bpe07g00113 340 Gene3D - 69 165 IPR036052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe07g00113 K12235 SRR; serine racemase [EC:5.1.1.18] - jre:109014449 536.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00113 Bpe-Chr7:817808 Bpe08g01291 Bpe-Chr8:14270639 2.50E-35 dispersed
Bpe07g00113 Bpe-Chr7:817808 Bpe03g01260 Bpe-Chr3:31198575 5.49E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g337 . Blo03g00210 Bda06g00086 . . Bpe07g00113 . . . . . . . . . . Cpe05g00324 . . . . . . . . . . . . . . . . . Cone9ag0772 . Csa05g00294 Chy09g01212 . . . . . . . . Bma12g00086 . . . . . . . . . Bhi12g00237 . . . . . . . . . . . . . Lsi09g00273 . . Cme09g01749
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013496 1 2 1 2 1 1 0 0 1 1 0 1 0 1 1 0 0 2 1 1 1 1 0 1 1 0 1 1 2 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe07g00113 Bpe_Chr07 FPKM 178.797379 188.137207 237.662689 230.753983 86.597084 101.874359 82.855515 280.882812 288.93103 254.858353